Post-translational modifications identified of histones
Saraf A, Cervantes S, Bunnik EM, Ponts N, Sardiu ME, Chung DD, Prudhomme J, Varberg JM, Wen Z, Washburn MP, Florens L, Le Roch KG. Dynamic and Combinatorial Landscape of Histone Modifications during the Intraerythrocytic Developmental Cycle of the Malaria Parasite. J Proteome Res. 2016 15(8):2787-801. PMID: 27291344. 
Abbreviations: NTac, N-terminal acetylation; ac, acetylation; me1, monomethylation; me2, dimethylation; me3, trimethylation; fo, formylation; phs, phosphorylation; ub, ubiquitination; oh, hydroxylation; n.c., amino acid residue not conserved; cr, crotonylation; amino acid residue not conserved; n.d., amino acid not detected as modified in this study; n.r., non-redundant count of PTMs undistinguishable between H3/H3.3 isoforms. 
25112 H2A
PF3D7_0617800 Histone-Residue Position Modification PTM Type PTM Location
1 H2A-NTacS1 NTac NT
2 H2A-K3ac Kac NT
3 H2A-K5ac Kac NT
4 H2A-K9ac Kac NT
5 H2A-K10ac Kac NT
6 H2A-K20ac Kac NT
6 H2A-K20fo fo NT
7 H2A-R29me1 me1 CD
8 H2A-K41fo fo CD
9 H2A-R42fo fo CD
10 H2A-P48oh oh CD
11 H2A-Y50oh oh CD
12 H2A-Y57oh oh CD
13 H2A-R71me1 me1 CD
14 H2A-K75me1 me1 CD
15 H2A-K95ac Kac CD
15 H2A-K95fo fo CD
16 H2A-T101ac STac CD
17 H2A-K118me1 me1 CT
17 H2A-K118oh oh CT
18 H2A-S120phs phs CT
19 H2A-T126phs phs CT
n.d. H2A-S1phs phs NT
n.d. H2A-K3me1 me1 NT
n.d. H2A-K3me3 me2 NT
n.d. H2A-K9me2 me2 NT
n.d. H2A-K9me3 me3 NT
n.d. H2A-K13ac Kac NT
n.d. H2A-S16phs phs NT
n.d. H2A-S18phs phs NT
n.d. H2A-K36ac Kac CD
n.d. H2A-K36fo fo CD
n.d. H2A-K36cr cr CD
n.d. H2A-Y39oh oh CD
n.d. H2A-R42me1 me1 CD
n.d. H2A-K74ac Kac CD
n.d. H2A-R77me1 me1 CD
n.d. H2A-R77me2 me2 CD
n.d. H2A-T79ac STac CD
n.d. H2A-R88me1 me1 CD
n.d. H2A-K95me1 me1 CD
n.d. H2A-K95me2 me2 CD
n.d. H2A-K95cr cr CD
n.d. H2A-K118fo fo CT
n.d. H2A-K118cr cr CT
n.d. H2A-K119ac Kac CT
n.d. H2A-K119me1 me1 CT
n.d. H2A-K119ub ub CT
n.d. H2A-K119cr cr CT
25110 H2A.Z
PF3D7_0320900 Histone-Residue Position Modification PTM Type PTM Location
1 H2Az-M1NTac/ac-ox NTac+ox NT
2 H2Az-K6ac Kac NT
3 H2Az-K11ac Kac NT
4 H2Az-K15ac Kac NT
5 H2Az-K19ac Kac NT
6 H2Az-K25ac Kac NT
7 H2Az-K28ac Kac NT
8 H2Az-K30ac Kac NT
9 H2Az-K35ac Kac NT
10 H2Az-Y77oh oh CD
11 H2Az-R115fo fo CD
12 H2Az-H138oh oh CT
13 H2Az-K139oh oh CT
X H2Az-M142ox ox CT
n.d. H2Az-S33phs phs NT
n.d. H2Az-K37ac Kac NT
n.d. H2Az-K38ac Kac NT
25116 H2B
PF3D7_1105100 Histone-Residue Position Modification PTM Type PTM Location
1 H2B-K3ac Kac NT
2 H2B-K7ac Kac NT
3 H2B-S24ac STac NT
4 H2B-R25fo fo NT
5 H2B-S28ac STac NT
6 H2B-Y29oh oh NT
7 H2B-Y32oh oh CD
8 H2B-K35ac Kac CD
8 H2B-K35fo fo CD
8 H2B-K35me1 me1 CD
8 H2B-K35me3 me3 CD
8 H2B-K35oh oh CD
9 H2B-K38ac Kac CD
9 H2B-K38fo fo CD
9 H2B-K38me2 me2 CD
9 H2B-K38oh oh CD
10 H2B-P42oh oh CD
11 H2B-K49ac Kac CD
11 H2B-K49cr cr CD
11 H2B-K49fo fo CD
11 H2B-K49me1 me1 CD
11 H2B-K49me2 me2 CD
11 H2B-K49me3 me3 CD
11 H2B-K49oh oh CD
12 H2B-S50ac STac CD
12 H2B-S50phs phs CD
13 H2B-S56phs phs CD
14 H2B-D60oh oh CD
15 H2B-T61ac STac CD
16 H2B-K64ac Kac CD
16 H2B-K64fo fo CD
16 H2B-K64me1 me1 CD
16 H2B-K64me2 me2 CD
16 H2B-K64me3 me3 CD
16 H2B-K64oh oh CD
17 H2B-R71me1 me1 CD
18 H2B-R91me1 me1 CD
19 H2B-P95oh oh CD
20 H2B-K100fo fo CD
20 H2B-K100oh oh CD
21 H2B-K108fo fo CD
21 H2B-K108me1 me1 CD
22 H2B-K112fo fo CD
22 H2B-K112ub ub CD
X H2B-M51ox ox CD
X H2B-M54ox ox CD
n.d. H2B-K3fo/H2Bv-K3fo fo NT
n.d. H2B-K3cr/H2Bv-K3cr cr NT
n.d. H2B-K4ac Kac NT
n.d. H2B-K7cr/H2Bv-K8cr cr NT
n.d. H2B-K9ac cr NT
n.d. H2B-K9me1/H2Bv-K13me1 me1 NT
n.d. H2B-K9cr/H2Bv-K13cr cr NT
n.d. H2B-K10ac Kac NT
n.d. H2B-K10cr/H2Bv-K14cr cr NT
n.d. H2B-S24phs phs NT
n.d. H2B-S28phs phs CD
n.d. H2B-Y29phs phs CD
n.d. H2B-T67phs phs CD
n.d. H2B-Y75phs phs CD
n.d. H2B-R77me1/H2Bv-K81me1 me1 CD
n.d. H2B-T80phs phs CD
n.d. H2B-K100ac/H2Bv-K104ac Kac CD
n.d. H2B-K100me1/H2Bv-K104me1 me1 CD
n.d. H2B-K100cr/H2Bv-K104cr cr CD
n.d. H2B-S104phs/H2Bv-S108phs phs CD
n.d. H2B-S104ac/H2Bv-S108ac STac CD
n.d. H2B-K108ac/H2Bv-K112ac Kac CD
n.d. H2B-K112ac/H2Bv-K116ac Kac CD
25114 H2B.Z
PF3D7_0714000 Histone-Residue Position Modification PTM Type PTM Location
1 H2Bv-NTacS1 NTac NT
2 H2Bv-K3ac Kac NT
3 H2Bv-K8ac Kac NT
4 H2Bv-K13ac Kac NT
5 H2Bv-K14ac Kac NT
6 H2Bv-K18ac Kac NT
7 H2Bv-R29fo fo NT
8 H2Bv-T30ac STac CD
9 H2Bv-K39fo fo CD
10 H2Bv-K42ac Kac CD
10 H2Bv-K42fo fo CD
11 H2Bv-K53ac Kac CD
11 H2Bv-K53fo fo CD
11 H2Bv-K53me2 me2 CD
11 H2Bv-K53oh oh CD
12 H2Bv-S54ac STac CD
13 H2Bv-D64oh oh CD
14 H2Bv-D67oh oh CD
15 H2Bv-R95fo fo CD
15 H2Bv-R95me1 me1 CD
16 H2Bv-K104fo fo CD
17 H2Bv-K112fo fo CD
17 H2Bv-K112me1 me1 CD
18 H2Bv-K116fo fo CD
18 H2Bv-K116ub ub CD
X H2Bv-M55ox ox CD
X H2Bv-M58ox ox CD
n.d. H2Bv-S1phs phs NT
n.d. H2B-K3fo/H2Bv-K3fo fo NT
n.d. H2B-K3cr/H2Bv-K3cr cr NT
n.d. H2B-K7cr/H2Bv-K8cr cr NT
n.d. H2B-K9me1/H2Bv-K13me1 me1 NT
n.d. H2B-K9cr/H2Bv-K13cr cr NT
n.d. H2B-K10cr/H2Bv-K14cr cr NT
n.d. H2Bv-K18me1 me1 NT
n.d. H2Bv-K18ub ub NT
n.d. H2Bv-K18cr cr NT
n.d. H2Bv-S32phs phs CD
n.d. H2Bv-K39me1 me1 CD
n.d. H2Bv-K42me2 me2 CD
n.d. H2Bv-K53me1 me1 CD
n.d. H2Bv-T71phs phs CD
n.d. H2Bv-R75me1 me1 CD
n.d. H2Bv-K81ac Kac CD
n.d. H2B-R77me1/H2Bv-K81me1 me1 CD
n.d. H2Bv-T84phs phs CD
n.d. H2B-K100ac/H2Bv-K104ac Kac CD
n.d. H2B-K100me1/H2Bv-K104me1 me1 CD
n.d. H2B-K100cr/H2Bv-K104cr cr CD
n.d. H2B-S104phs/H2Bv-S108phs phs CD
n.d. H2B-S104ac/H2Bv-S108ac STac CD
n.d. H2B-K108ac/H2Bv-K112ac Kac CD
n.d. H2B-K112ac/H2Bv-K116ac Kac CD
25111 H3
PF3D7_0610400 Histone-Residue Position Modification PTM Type PTM Location
1 H3-K9ac Kac NT
1 H3-K9me1 me1 NT
1 H3-K9me2 me2 NT
1 H3-K9me3 me3 NT
1 H3-K9cr cr NT
2 H3-S10ac STac NT
3 H3-K14ac Kac NT
3 H3-K14fo fo NT
3 H3-K14me3 me3 NT
4 H3-R17me1 me1 NT
4 H3-R17me2 me2 NT
5 H3-K18ac Kac NT
5 H3/H3.3-K18cr cr NT
5 H3/H3.3-K18fo fo NT
5 H3-K18me1 me1 NT
6 H3-S22ac STac NT
7 H3/H3.3-K23ac Kac NT
8 H3-K27ac Kac NT
8 H3-K27me1 me1 NT
8 H3-K27cr cr NT
8 H3-K27fo fo NT
9 H3-S28ac STac NT
9 H3-S28phs phs NT
10 H3-S32phs phs NT
11 H3-K36ac Kac NT
11 H3-K36fo fo NT
11 H3-K36me1 me1 NT
11 H3-K36me2 me2 NT
12 H3/H3.3-R42me2 me2 NT
12 H3/H3.3-R42fo fo NT
13 H3-R53fo fo CD
14 H3-Y54oh oh CD
15 H3-K56ac Kac CD
15 H3-K56fo fo CD
16 H3-R72fo fo CD
17 H3-Y78phs phs CD
18 H3-K79ac Kac CD
18 H3-K79fo fo CD
18 H3-K79me1 me1 CD
18 H3-K79me2 me2 CD
18 H3-K79me3 me3 CD
18 H3-K79oh oh CD
19 H3-T80phs phs CD
20 H3-R83fo fo CD
20 H3-R83me1 me1 CD
21 H3-Y99phs phs CD
22 H3-D106oh oh CD
23 H3-T107ac STac CD
23 H3-T107phs phs CD
24 H3-H113oh oh CD
25 H3-K115ac Kac CD
25 H3-K115cr cr CD
25 H3-K115me2 me2 CD
25 H3-K115me3 me3 CD
25 H3-K115oh oh CD
26 H3/H3.3-R116fo fo CD
27 H3/H3.3-P121oh oh CD
28 H3/H3.3-K122ac Kac CD
28 H3/H3.3-K122fo fo CD
28 H3/H3.3-K122me1 me1 CD
X H3-M90ox ox CD
X H3/H3.3-M120ox ox CD
n.d. H3/H3.3-R2me2 me2 NT
n.d. H3/H3.3-T3phs phs NT
n.d. H3/H3.3-K4ac Kac NT
n.d. H3/H3.3-K4me1 me1 NT
n.d. H3/H3.3-K4me2 me2 NT
n.d. H3/H3.3-K4me3 me3 NT
n.d. H3/H3.3-K4cr cr NT
n.d. H3/H3.3-T6phs phs NT
n.d. H3/H3.3-R8me1 me1 NT
n.d. H3/H3.3-R8me2 me2 NT
n.d. H3/H3.3-S10phs phs NT
n.d. H3/H3.3-T11phs phs NT
n.d. H3/H3.3-K14me1 me1 NT
n.d. H3/H3.3-K14me2 me2 NT
n.d. H3/H3.3-S22phs phs NT
n.d. H3/H3.3-K23me1 me1 NT
n.d. H3/H3.3-K23fo fo NT
n.d. H3/H3.3-K23cr cr NT
n.d. H3/H3.3-R26me1 me1 NT
n.d. H3/H3.3-K27me2 me2 NT
n.d. H3-K27me3 me3 NT
n.d. H3/H3.3-K36me3 me3 NT
n.d. H3-K37me1 me1 NT
n.d. H3-R40me1 me1 NT
n.d. H3/H3.3-Y41phs phs CD
n.d. H3/H3.3-T45phs phs CD
n.d. H3/H3.3-K56me1 me1 CD
n.d. H3/H3.3-K56me2 me2 CD
n.d. H3/H3.3-K56me3 me3 CD
n.d. H3/H3.3-K56cr cr CD
n.d. H3/H3.3-S57phs phs CD
n.d. H3/H3.3-R63me1 me1 CD
n.d. H3/H3.3-K64ac Kac CD
n.d. H3/H3.3-K64me1 me1 CD
n.d. H3/H3.3-K64fo fo CD
n.d. H3/H3.3-K79cr cr CD
n.d. H3/H3.3-T80ac STac CD
n.d. H3/H3.3-R83me2 me2 CD
n.d. H3/H3.3-S86phs phs CD
n.d. H3/H3.3-K115ub ub CD
n.d. H3/H3.3-T118phs phs CD
n.d. H3/H3.3-K122cr cr CD
n.d. H3/H3.3-R128me1 me1 CT
n.d. H3/H3.3-R134me1 me1 CT
25113 H3.3
PF3D7_0617900 Histone-Residue Position Modification PTM Type PTM Location
1 H3.3-K9ac Kac NT
1 H3.3-K9cr cr NT
1 H3.3-K9me1 me1 NT
1 H3.3-K9me2 me2 NT
2 H3.3-S10ac STac NT
3 H3.3-T11ac STac NT
4 H3.3-K14ac Kac NT
5 H3.3-R17me1 me1 NT
5 H3.3-R17me2 me2 NT
6 H3.3-K18ac Kac NT
6 H3/H3.3-K18cr cr NT
6 H3/H3.3-K18fo fo NT
6 H3.3-K18me1 me1 NT
7 H3.3-S22ac STac NT
8 H3/H3.3-K23ac Kac NT
9 H3.3-K27ac Kac NT
9 H3.3-K27me3 me3 NT
10 H3.3-S28phs phs NT
11 H3.3-S32phs phs NT
12 H3.3-K36ac Kac NT
12 H3.3-K36fo fo NT
13 H3.3-K37me1 me1 NT
14 H3.3-R40me1 me1 NT
15 H3/H3.3-R42fo fo NT
15 H3/H3.3-R42me2 me2 NT
16 H3.3-K53fo fo CD
16 H3.3-K53oh oh CD
17 H3.3-K56fo fo CD
18 H3.3-R72fo fo CD
19 H3.3-K79fo fo CD
20 H3.3-S86ac STac CD
21 H3.3-Y99oh oh CD
22 H3.3-D106oh oh CD
23 H3.3-H113oh oh CD
25 H3.3-K115cr cr CD
25 H3.3-K115oh oh CD
25 H3/H3.3-R116fo fo CD
26 H3/H3.3-P121oh oh CD
27 H3/H3.3-K122ac Kac CD
27 H3/H3.3-K122fo fo CD
27 H3/H3.3-K122me1 me1 CD
X H3/H3.3-M120ox ox CD
n.d. H3/H3.3-R2me2 me2 NT
n.d. H3/H3.3-T3phs phs NT
n.d. H3/H3.3-K4ac Kac NT
n.d. H3/H3.3-K4me1 me1 NT
n.d. H3/H3.3-K4me2 me2 NT
n.d. H3/H3.3-K4me3 me3 NT
n.d. H3/H3.3-K4cr cr NT
n.d. H3/H3.3-T6phs phs NT
n.d. H3/H3.3-R8me1 me1 NT
n.d. H3/H3.3-R8me2 me2 NT
n.d. H3.3-K9me3 me3 NT
n.d. H3/H3.3-S10phs phs NT
n.d. H3/H3.3-T11phs phs NT
n.d. H3/H3.3-K14me1 me1 NT
n.d. H3/H3.3-K14me2 me2 NT
n.d. H3.3-K14me3 me3 NT
n.d. H3/H3.3-S22phs phs NT
n.d. H3/H3.3-K23me1 me1 NT
n.d. H3/H3.3-K23fo fo NT
n.d. H3/H3.3-K23cr cr NT
n.d. H3/H3.3-R26me1 me1 NT
n.d. H3.3-K27me1 me1 NT
n.d. H3/H3.3-K27me2 me2 NT
n.d. H3.3-K27cr cr NT
n.d. H3.3-K36me1 me1 NT
n.d. H3.3-K36me2 me2 NT
n.d. H3/H3.3-K36me3 me3 NT
n.d. H3/H3.3-Y41phs phs CD
n.d. H3/H3.3-T45phs phs CD
n.d. H3.3-K56ac Kac CD
n.d. H3/H3.3-K56me1 me1 CD
n.d. H3/H3.3-K56me2 me2 CD
n.d. H3/H3.3-K56me3 me3 CD
n.d. H3/H3.3-K56cr cr CD
n.d. H3/H3.3-S57phs phs CD
n.d. H3/H3.3-R63me1 me1 CD
n.d. H3/H3.3-K64ac Kac CD
n.d. H3/H3.3-K64me1 me1 CD
n.d. H3/H3.3-K64fo fo CD
n.d. H3.3-K79ac Kac CD
n.d. H3.3-K79me1 me1 CD
n.d. H3.3-K79me2 me2 CD
n.d. H3.3-K79me3 me3 CD
n.d. H3/H3.3-K79cr cr CD
n.d. H3.3-T80phs phs CD
n.d. H3/H3.3-T80ac STac CD
n.d. H3.3-R83me1 me1 CD
n.d. H3/H3.3-R83me2 me2 CD
n.d. H3/H3.3-S86phs phs CD
n.d. H3.3-T107phs phs CD
n.d. H3.3-K115ac Kac CD
n.d. H3/H3.3-K115ub ub CD
n.d. H3/H3.3-T118phs phs CD
n.d. H3/H3.3-K122cr cr CD
n.d. H3/H3.3-R128me1 me1 CT
n.d. H3/H3.3-R134me1 me1 CT
25117 H3.c
PF3D7_1333700 Histone-Residue Position Modification PTM Type PTM Location
1 H3.c-K23ac Kac NT
2 H3.c-K26ac Kac NT
3 H3.c-K60ac Kac NT
4 H3.c-R108fo fo CD
X H3.c-M155ox ox CD
25115 H4
PF3D7_1105000 Histone-Residue Position Modification PTM Type PTM Location
1 H4-NTacS1 NTac NT
2 H4-R3me1 me1 NT
3 H4-K5ac Kac NT
4 H4-K8ac Kac NT
5 H4-K12ac Kac NT
6 H4-K16ac Kac NT
7 H4-K20ac Kac NT
8 H4-K31ac Kac CD
8 H4-K31fo fo CD
9 H4-R35me1 me1 CD
10 H4-R45fo fo CD
11 H4-S47ac STac CD
12 H4-Y51oh oh CD
13 H4-R55me1 me1 CD
14 H4-K59fo fo CD
15 H4-K67ac Kac CD
15 H4-K67fo fo CD
15 H4-K67me1 me1 CD
15 H4-K67me2 me2 CD
16 H4-D68oh oh CD
17 H4-Y72oh oh CD
18 H4-K77ac Kac CD
18 H4-K77me1 me1 CD
18 H4-K77oh oh CD
19 H4-K79ac Kac CD
19 H4-K79fo fo CD
19 H4-K79me1 me1 CD
19 H4-K79me2 me2 CD
20 H4-D85oh oh CD
21 H4-Y88oh oh CD
22 H4-K91ac Kac CT
22 H4-K91fo fo CT
22 H4-K91me1 me1 CT
X H4-M71ox ox CD
X H4-M84ox ox CD
n.d. H4-S1phs phs NT
n.d. H4-R3me2 me2 NT
n.d. H4-K5me1 me1 NT
n.d. H4-K5me3 me3 NT
n.d. H4-K5cr cr NT
n.d. H4-K8cr cr NT
n.d. H4-K12me1 me1 NT
n.d. H4-K12fo fo NT
n.d. H4-K12cr cr NT
n.d. H4-K16me1 me1 NT
n.d. H4-K16me3 me3 NT
n.d. H4-K16cr cr NT
n.d. H4-R17me1 me1 NT
n.d. H4-R17me2 me2 NT
n.d. H4-R19me1 me1 NT
n.d. H4-R19me2 me2 NT
n.d. H4-K20me1 me1 NT
n.d. H4-K20me2 me2 NT
n.d. H4-K20me3 me3 NT
n.d. H4-R23me1 me1 NT
n.d. H4-R23me2 me2 NT
n.d. H4-K31me1 me1 CD
n.d. H4-S47phs phs CD
n.d. H4-Y51phs phs CD
n.d. H4-K59ac Kac CD
n.d. H4-K59me1 me1 CD
n.d. H4-K59me2 me2 CD
n.d. H4-K77fo fo CD
n.d. H4-R78me1 me1 CD
n.d. H4-R78me2 me2 CD
n.d. H4-K79me3 me3 CD
n.d. H4-T80phs phs CD
n.d. H4-T82phs phs CD
n.d. H4-Y88phs phs CD
n.d. H4-K91ub cr CT
n.d. H4-K91cr cr CT
n.d. H4-R92me1 me1 CT
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