Genes differentially expressed in severe malaria
Tonkin-Hill GQ, Trianty L, Noviyanti R, Nguyen HHT, Sebayang BF, Lampah DA, Marfurt J, Cobbold SA, Rambhatla JS, McConville MJ, Rogerson SJ, Brown GV, Day KP, Price RN, Anstey NM, Papenfuss AT, Duffy MF. The Plasmodium falciparum transcriptome in severe malaria reveals altered expression of genes involved in important processes including surface antigen-encoding  genes. PLoS Biol. 2018 Mar 12;16 :e2004328. PMID: 29529020;
Fold change = gene expression in severe malaria compared to uncomplicated malaria
PfID Annotation Fold change EC# Transcript
29460 PF3D7_1372100 Plasmodium exported protein (PHISTb), unknown function gametocyte exported protein 4 8.75
29293 PF3D7_0423800
RH5-Ripr membrane anchoring protein cysteine-rich protective antigen 4.89
29369 PF3D7_0925300
proline--tRNA ligase, putative 4.31 6.1.1.15
29487 PF3D7_1477700
Plasmodium exported protein (PHISTa), unknown function 4.26
29450 PF3D7_1346200 nuclear import protein MOG1, putative 4.01
29385 PF3D7_1100300 rifin 3.98
29280 PF3D7_0404900
6-cysteine protein 3.74
29474 PF3D7_1437800 41-2 protein antigen precursor trafficking protein particle complex subunit 5, putative 3.41
29455 PF3D7_1355200 RAP protein, putative 3.10
29358 PF3D7_0830300 sporozoite invasion-associated protein 2 3.01
29316 PF3D7_0606800 VFT protein 2.93
29417 PF3D7_1226600
proliferating cell nuclear antigen 2 2.82
29386 PF3D7_1102600 gametocyte exported protein 14 Plasmodium exported protein, unknown function 2.75
38969 PF3D7_1321600
cGMP-specific 3',5'-cyclic phosphodiesterase gamma, putative 2.64 3.1.4.17
29456 PF3D7_1355700 NLI interacting factor-like phosphatase, putative 2.36 3.1.3.16
29409 PF3D7_1205700
targeted glyoxalase II 2.34 3.1.2.6
29315 PF3D7_0601600 tetratricopeptide repeat protein, putative 2.34
29389 PF3D7_1103400
sulfur cluster assembly protein SufD 2.29
29376 PF3D7_1015800
ribonucleoside-diphosphate reductase small chain, putative 2.29 1.17.4.1
29320 PF3D7_0613900 myosin E, putative 2.28
29338 PF3D7_0713600 ribosomal protein S5, mitochondrial, putative 2.24
29375 PF3D7_1013000 zinc finger protein, putative 2.20
29471 PF3D7_1431600 succinyl-CoA ligase [ADP-forming] subunit beta 2.17 6.2.1.5
29368 PF3D7_0923100
OTU-like cysteine protease, putative 2.16 3.4.22.-
29405 PF3D7_1145500 ABC transporter B family member 3, putative. ABCB3 2.15
29459 PF3D7_1366500
nucleoside diphosphate kinase 2.13 2.7.4.6
29449 PF3D7_1345200 rhomboid protease ROM6, putative 2.12 3.4.21.105
29402 PF3D7_1126300 DnaJ protein, putative 2.10
29396 PF3D7_1118400
haloacid dehalogenase-like hydrolase, putative 2.09
29473 PF3D7_1436500 GTP-binding protein, putative 2.08
29353 PF3D7_0817100 tRNA modification GTPase, putative 2.06
29426 PF3D7_1244200 RNA polymerase II transcription factor B subunit 2, putative 2.04 2.7.7.6
29411 PF3D7_1212800
succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial 2.03 1.3.99.1
29269 PF3D7_0303400
palmitoyltransferase 2.00 2.3.1.-
29470 PF3D7_1428100 WW domain-binding protein 11, putative 1.95
29270 PF3D7_0305000
elongation factor Ts 1.93
29347 PF3D7_0804900 GTPase-activating protein, putative 1.89
29418 PF3D7_1230500 WD repeat-containing protein, putative 1.88
29308 PF3D7_0524800 ubiquitin fusion degradation protein 1, putative 1.84
29341 PF3D7_0724000 Rab GTPase activator and protein kinase, putative 1.83
29273 PF3D7_0317100 6-cysteine protein 1.83
29401 PF3D7_1126100
autophagy-related protein 7, putative 1.81
29377 PF3D7_1019300 zinc finger protein, putative 1.79
29394 PF3D7_1111300 protein transport protein BOS1, putative 1.79
29323 PF3D7_0625600 poly(A) polymerase PAP, putative 1.79 2.7.7.19
29328 PF3D7_0705600 RNA helicase, putative 1.78 3.6.4.13
29354 PF3D7_0821500 ribosomal RNA small subunit methyltransferase NEP1, putative 1.77 2.1.1.260
29319 PF3D7_0612700
6-cysteine protein p12 1.76
29321 PF3D7_0614200 cytosolic Fe-S cluster assembly factor NAR1, putative 1.76 1.12.7.2
29484 PF3D7_1459300 OPA3-like protein, putative 1.74
29264 PF3D7_0216400
vacuolar protein sorting-associated protein 45, putative 1.73
29453 PF3D7_1353500 RNA polymerase II transcription factor B subunit 4, putative 1.71 2.7.7.6
29348 PF3D7_0805600
phosphatidic acid phosphatase 2; phospholipid phosphatase pap2 1.71 3.1.3.4
29479 PF3D7_1450300
NADPH--cytochrome P450 reductase, putative 1.70
29478 PF3D7_1446900 glutaminyl-peptide cyclotransferase, putative 1.70 2.3.2.5
29392 PF3D7_1108700
heat shock protein 40, type ii 1.68
29413 PF3D7_1215900
serpentine receptor 10, PfSr10 1.67
29759 PF3D7_1365600
DNA topoisomerase 6 subunit b, putative 1.66
29441 PF3D7_1309600
ribosomal RNA methyltransferase, putative 1.66 2.1.1.56
29362 PF3D7_0903100 protein RER1, putative 1.62
29477 PF3D7_1445600 RNA-binding protein, putative 1.60
29290 PF3D7_0419800 60S ribosomal protein L7ae/L30e, putative 1.56
29431 PF3D7_1253100 Plasmodium exported protein (PHISTa), unknown function 1.53
29404 PF3D7_1142400
coproporphyrinogen-III oxidase HemF 1.51 1.3.3.3
29274 PF3D7_0317500
kinesin-5 1.50
29393 PF3D7_1111000 RNA cytosine c(5)-methyltransferase nsun2 1.48 2.1.1.29
29436 PF3D7_1305400 AAR2 protein, putative 1.48
29261 PF3D7_0209700 RING zinc finger protein, putative 1.47
29468 PF3D7_1426000 60S ribosomal protein L21 1.40
29311 PF3D7_0528800 nuclear GTP-binding protein, putative 1.39 3.6.5.2
29438 PF3D7_1308300 40S ribosomal protein S27 1.36
29858 PF3D7_0621300
mRNA-binding protein puf3 1.36
29364 PF3D7_0907700 proteasome activator 28 1.33
29483 PF3D7_1458000
cysteine proteinase falcipain 1 1.26 3.4.22.-
29318 PF3D7_0608700 T-complex protein 1 subunit zeta 0.78
29310 PF3D7_0528100 AP-1/2 complex subunit beta, putative 0.77
29301 PF3D7_0509800
phosphatidylinositol 4-kinase beta 0.77 2.7.1.67
29486 PF3D7_1466300 26S proteasome regulatory subunit RPN2, putative 0.76 3.4.25.1
29309 PF3D7_0527500
Hsc70-interacting protein 0.76
29381 PF3D7_1030100
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22, putative 0.75 3.6.4.13
29472 PF3D7_1434300
Hsp70/Hsp90 organizing protein 0.75
29399 PF3D7_1124100 beach domain-containing protein, putative 0.75
29340 PF3D7_0717400 queuine tRNA-ribosyltransferase, putative 0.75 2.4.2.29
29329 PF3D7_0707900 ribosomal protein S8e, putative 0.75
29452 PF3D7_1350100
lysine--tRNA ligase 0.74 6.1.1.6
29275 PF3D7_0319600 elongation factor 1-delta, putative 0.74
29317 PF3D7_0607000 translation initiation factor IF-2, putative 0.73
33925 PF3D7_1244800 translation machinery-associated protein 46, putative 0.73
29437 PF3D7_1306400
26S protease regulatory subunit 10B, putative; 26S proteasome AAA-ATPase subunit RPT4, putative 0.72 3.6.4.8
29451 PF3D7_1347500
DNA/RNA-binding protein Alba 4 0.72
29434 PF3D7_1302700 ATP-dependent RNA helicase  dhr1, putative 0.72 3.6.4.13
29430 PF3D7_1250800 DNA repair protein rhp16, putative 0.72
29425 PF3D7_1244100 N-alpha-acetyltransferase 15, NatA auxiliary subunit, putative 0.72 2.3.1.88
29305 PF3D7_0518300
proteasome subunit beta type-1, putative 0.71 3.4.25.1
29331 PF3D7_0709600 ribonucleases P/MRP protein subunit POP1, putative 0.71 3.1.26.5
29339 PF3D7_0716000 RNA-binding protein, putative 0.71
29299 PF3D7_0508700 pre-mRNA-processing ATP-dependent RNA helicase PRP5, putative 0.71 3.6.4.13
29366 PF3D7_0913200 elongation factor 1-beta 0.71
29454 PF3D7_1354300 large subunit rRNA methyltransferase, putative 0.70 2.1.1.-
29457 PF3D7_1360100 RNA-binding protein, putative 0.70
29291 PF3D7_0420000 zinc finger protein, putative 0.70
29357 PF3D7_0826100 HECT-like E3 ubiquitin ligase, putative 0.69 6.3.2.19
29257 PF3D7_0201800
knob associated heat shock protein 40 0.69
29445 PF3D7_1322100
set domain-containing protein 2 0.69 2.1.1.43
29367 PF3D7_0915100
SUMO-conjugating enzyme UBC9 0.69
29444 PF3D7_1321700 splicing factor 1 0.69
29302 PF3D7_0511000
translationally-controlled tumor protein homolog 0.69
29287 PF3D7_0415300
cdc2-related protein kinase 3 0.68 2.7.11.22
29298 PF3D7_0506700 GTPase-activating protein, putative 0.68
29281 PF3D7_0405400 pre-mRNA-processing-splicing factor 8, putative 0.68
29412 PF3D7_1214600 adrenodoxin-type ferredoxin, putative 0.68
29447 PF3D7_1344200 PfHsp70-y 0.68
29421 PF3D7_1235300 CCR4-NOT transcription complex subunit 4, putative 0.67
29400 PF3D7_1124800 ribosome biogenesis regulatory protein, putative 0.67
29465 PF3D7_1412700 AAA family ATPase, putative 0.67 3.6.1.3
29378 PF3D7_1025000
eps15-like protein 0.67
29307 PF3D7_0522300
S-adenosylmethionine-dependent methyltransferase, putative 0.67 2.1.1.12
29475 PF3D7_1439100 DEAD/DEAH box helicase, putative 0.67 3.6.4.13
29373 PF3D7_1011800 PRE-binding protein 0.67
29387 PF3D7_1102700 early transcribed membrane protein 11.1 0.67
29467 PF3D7_1423200 peptidyl-prolyl cis-trans isomerase 0.67 5.2.1.8
29345 PF3D7_0801700 sentrin-specific protease 2, putative 0.66 5.3.1.8
29398 PF3D7_1123100
calcium-dependent protein kinase 7 0.66 2.7.11.17
29265 PF3D7_0218700 pre-mRNA-processing protein 45, putative 0.66
29355 PF3D7_0823200 RNA-binding protein, putative 0.65
29429 PF3D7_1247400
peptidyl-prolyl cis-trans isomerase fkbp 0.65 5.2.1.8
29466 PF3D7_1414500
atypical protein kinase, ABC-1 family, putative 0.64 1.14.13.-
29300 PF3D7_0509000 alpha-soluble nsf attachment protein, putative 0.64
29262 PF3D7_0211800 asparagine--tRNA ligase 0.64 6.1.1.22
29480 PF3D7_1451100
elongation factor 2 0.64
29482 PF3D7_1457000
signal peptide peptidase 0.64 3.4.21.89
29256 PF3D7_0201600
PHISTb domain-containing RESA-like protein 1 0.64
29406 PF3D7_1149500 ring-infected erythrocyte surface antigen 2, pseudogene 0.64
29395 PF3D7_1115200
histone-lysine n-methyltransferase set7 0.63 2.1.1.43
29327 PF3D7_0704600
HECT-type E3 ubiquitin ligase UT 0.63 6.3.2.19
29260 PF3D7_0202500
early transcribed membrane protein 2 0.63
29391 PF3D7_1108600
endoplasmic reticulum-resident calcium binding protein 0.63
29374 PF3D7_1012000 ring zinc finger protein, putative 0.62
29481 PF3D7_1451800
sortilin 0.62
29288 PF3D7_0416000 RNA-binding protein, putative 0.62
29476 PF3D7_1444800
fructose-bisphosphate aldolase 0.62 4.1.2.13
29485 PF3D7_1462800
glyceraldehyde-3-phosphate dehydrogenase 0.62 1.2.1.12
29410 PF3D7_1208600 mitochondrial import inner membrane translocase subunit TIM10, putative 0.62
29403 PF3D7_1128100 prefoldin subunit 5, putative 0.61
29419 PF3D7_1231600 pre-mRNA-splicing factor ATP-dependent RNA helicase PRP2, putative 0.61 3.6.4.13
29439 PF3D7_1309100 60S ribosomal protein L24, putative 0.61
29330 PF3D7_0708500 heat shock protein 86 family protein 0.60
29286 PF3D7_0413900 ubiquitin carboxyl-terminal hydrolase 13, putative 0.60 3.4.19.12
29440 PF3D7_1309400 HORMA domain protein, putative 0.59
29356 PF3D7_0823800 DnaJ protein, putative 0.59
29464 PF3D7_1401600 Plasmodium exported protein (PHISTb), unknown function; MEC domain-containing protein 0.59
29370 PF3D7_0935900
ring-exported protein 1 0.59
29379 PF3D7_1027300
peroxiredoxin merozoite capping protein 1 0.59 1.11.1.15
29435 PF3D7_1303100 methyltransferase, putative 0.59 2.1.1.37
29414 PF3D7_1223400 phospholipid-transporting ATPase, putative 0.59 3.6.3.1
29448 PF3D7_1344800
aspartate carbamoyltransferase 0.59 2.1.3.2
29461 PF3D7_1373500 erythrocyte membrane protein 1, PfEMP1 0.58
29446 PF3D7_1324200 micro-fibrillar-associated protein, putative 0.58
29489 PF3D7_1424500 small nucleolar RNA snoR27 0.56
29349 PF3D7_0808600 erythrocyte membrane protein 1, PfEMP1 0.56
29428 PF3D7_1246600 pre-mRNA-splicing factor CWC26, putative 0.55
29463 PF3D7_1401400 early transcribed membrane protein 14.1 0.55
29266 PF3D7_0220500 Plasmodium exported protein (hyp2), unknown function 0.55
29371 PF3D7_0936800
Plasmodium exported protein (PHISTc), unknown function 0.54
29433 PF3D7_1301400
Plasmodium exported protein (hyp12), unknown function 0.54
29363 PF3D7_0905300
dynein heavy chain, putative 0.54
29276 PF3D7_0323000 translation machinery-associated protein 7, putative 0.54
29289 PF3D7_0416100
glutamyl-tRNA(Gln) amidotransferase subunit A 0.53 6.3.5.7
29388 PF3D7_1102800 early transcribed membrane protein 11.2 0.53
29282 PF3D7_0411900 DNA polymerase alpha 0.53 2.7.7.7
29283 PF3D7_0412400 erythrocyte membrane protein 1, PfEMP1 0.53
29295 PF3D7_0501300
skeleton-binding protein 1 0.53
29422 PF3D7_1240400 erythrocyte membrane protein 1, PfEMP1 0.52
29420 PF3D7_1232200
dihydrolipoyl dehydrogenase, mitochondrial 0.52 1.8.1.4
38931 PF3D7_0519500 ccr4 domain-containing protein 1, putative 0.52
29360 PF3D7_0833500 erythrocyte membrane protein 1, PfEMP1 0.51
29350 PF3D7_0808700
erythrocyte membrane protein 1, PfEMP1 0.51
29359 PF3D7_0831700
PfHsp70-x 0.51
29380 PF3D7_1028000 methyltransferase, putative 0.50 2.1.1.61
29303 PF3D7_0512000
prefoldin subunit 6 0.49
29342 PF3D7_0733000 erythrocyte membrane protein 1, PfEMP1 0.49
29326 PF3D7_0700100
erythrocyte membrane protein 1, PfEMP1 0.48
29304 PF3D7_0513600
deoxyribodipyrimidine photo-lyase, putative 0.48 4.1.99.3
29296 PF3D7_0501400 interspersed repeat antigen 0.48
29292 PF3D7_0421300
erythrocyte membrane protein 1, PfEMP1 0.48
29390 PF3D7_1105100
histone H2B 0.48
29344 PF3D7_0800300 erythrocyte membrane protein 1, PfEMP1 0.48
29397 PF3D7_1122900
dynein heavy chain, putative 0.47
29279 PF3D7_0400200 erythrocyte membrane protein 1 (PfEMP1), exon 2, pseudogene 0.47
29337 PF3D7_0712900 erythrocyte membrane protein 1, PfEMP1 0.47
29383 PF3D7_1041300 erythrocyte membrane protein 1, PfEMP1 0.47
29488 PF3D7_1341100 U6 spliceosomal RNA 0.47
29352 PF3D7_0810800
hydroxymethyldihydropterin pyrophosphokinase-dihydropteroate synthase 0.46 2.5.1.15
29268 PF3D7_0300100 erythrocyte membrane protein 1, PfEMP1 0.46
29267 PF3D7_0223500 erythrocyte membrane protein 1, PfEMP1 0.45
29332 PF3D7_0711700 erythrocyte membrane protein 1, PfEMP1 0.45
29285 PF3D7_0412900 erythrocyte membrane protein 1, PfEMP1 0.44
29312 PF3D7_0532300
Plasmodium exported protein (PHISTb), unknown function 0.44
29334 PF3D7_0712300 erythrocyte membrane protein 1, PfEMP1 0.43
29423 PF3D7_1240600
erythrocyte membrane protein 1, PfEMP1 0.43
29324 PF3D7_0631600 Plasmodium exported protein (hyp5), unknown function exported protein family 4 0.43
29325 PF3D7_0632800 erythrocyte membrane protein 1, PfEMP1 0.42
33977 PF3D7_1316600
CTP:phosphocholine cytidylyltransferase 0.42 2.7.7.15
39001 mal_rna_17 large subunit ribosomal RNA fragment E 0.42
29346 PF3D7_0802000
glutamate dehydrogenase, putative 0.42 1.4.1.2
29277 PF3D7_0324900
erythrocyte membrane protein 1, PfEMP1 0.41
29294 PF3D7_0500100 erythrocyte membrane protein 1, PfEMP1 0.41
29384 PF3D7_1100100 erythrocyte membrane protein 1, PfEMP1 0.41
29382 PF3D7_1035800 probable protein, unknown function 0.41
29255 PF3D7_0200100 erythrocyte membrane protein 1, PfEMP1 0.41
29313 PF3D7_0532400
lysine-rich membrane-associated PHISTb protein 0.40
29462 PF3D7_1400100 erythrocyte membrane protein 1 (PfEMP1), truncated, pseudogene 0.40
29297 PF3D7_0503100
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, putative 0.40 2.7.1.148
29372 PF3D7_1000100 erythrocyte membrane protein 1, PfEMP1 0.40
29336 PF3D7_0712800 erythrocyte membrane protein 1, PfEMP1 0.39
29424 PF3D7_1240900 erythrocyte membrane protein 1, PfEMP1 0.38
29272 PF3D7_0316600
formate-nitrite transporter, FNT 0.38
29284 PF3D7_0412700
erythrocyte membrane protein 1, PfEMP1 0.37
29271 PF3D7_0311700
plasmepsin VI 0.36 3.4.23.-
29361 PF3D7_0900100 erythrocyte membrane protein 1, PfEMP1 0.36
29252 PF3D7_0113000
glutamic acid-rich protein 0.36
29365 PF3D7_0907900
peptide deformylase 0.36 3.5.1.88
29432 PF3D7_1255200 erythrocyte membrane protein 1, PfEMP1 0.36
29258 PF3D7_0201900
erythrocyte membrane protein 3 0.35
29333 PF3D7_0712000 erythrocyte membrane protein 1, PfEMP1 0.34
29407 PF3D7_1200100 erythrocyte membrane protein 1, PfEMP1 0.33
29278 PF3D7_0400100 erythrocyte membrane protein 1, PfEMP1 0.33
29343 PF3D7_0800100 erythrocyte membrane protein 1, PfEMP1 0.33
29469 PF3D7_1427200
selenoprotein 0.33
38234 mal_rna_11 mal_rna_11:rRNA 0.32
38235 PF3D7_1421150 C/D small nucleolar RNA 0.32
29416 PF3D7_1224000
GTP cyclohydrolase I 0.31 3.5.4.16
29314 PF3D7_0600600 erythrocyte membrane protein 1 (PfEMP1), exon 2 0.31
29254 PF3D7_0115700
erythrocyte membrane protein 1, PfEMP1 0.31
29335 PF3D7_0712600 erythrocyte membrane protein 1, PfEMP1 0.30
29351 PF3D7_0809100 erythrocyte membrane protein 1, PfEMP1 0.29
29408 PF3D7_1200200 PIR protein rifin 0.28
29491 PF3D7_1244300 ACEA small nucleolar RNA U3 0.26
29253 PF3D7_0115200 rifin PIR protein 0.24
29263 PF3D7_0216000 DEAD/DEAH box helicase, putative 0.24 3.6.4.13
29415 PF3D7_1223900 50S ribosomal protein L24, putative 0.21
29259 PF3D7_0202000
knob-associated histidine-rich protein 0.21
29251 PF3D7_0101000 rifin PIR protein 0.21
29490 PF3D7_1213100 U1 spliceosomal RNA 0.20
+ 100 conserved proteins, unknown function and 13 conserved Plasmodium membrane protein, unknown function
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