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Splicing and non-sense-mediated decay factors |
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Sorber K, Dimon MT, DeRisi JL. RNA-Seq analysis of splicing in Plasmodium falciparum uncovers new splice junctions, alternative splicing and splicing of antisense transcripts. Nucleic Acids Res. 2011 39(9):3820- |
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Complex |
PfID |
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Annotation |
EC |
Transcript |
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| 20572 |
snRNP core (stability and functionofU1, U2, U4 and U5 snRNPs) |
PF3D7_1414800 |
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small nuclear ribonucleoprotein-associated protein B, putative |
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| 20552 |
PF3D7_1125500 |
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small nuclear ribonucleoprotein Sm D1, putative |
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| 20506 |
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PF3D7_0218500 |
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small nuclear ribonucleoprotein Sm D2, putative |
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| 20536 |
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PF3D7_0909800 |
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small nuclear ribonucleoprotein Sm D3, putative |
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| 20566 |
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PF3D7_1350200 |
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small nuclear ribonucleoprotein E, putative |
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| 20553 |
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PF3D7_1126900 |
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small nuclear ribonucleoprotein F, putative |
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| 20533 |
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PF3D7_0822300 |
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small nuclear ribonucleoprotein G, putative |
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| 20520 |
U6 core (stability and function of U6 snRNP) |
PF3D7_0520300 |
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U6 snRNA-associated Sm-like protein LSm2, putative |
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| 20532 |
PF3D7_0819900 |
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U6 snRNA-associated Sm-like protein LSm3, putative |
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| 20548 |
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PF3D7_1107000 |
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U6 snRNA-associated Sm-like protein LSm4, putative |
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| 20574 |
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PF3D7_1443300 |
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U6 snRNA-associated Sm-like protein LSm5, putative |
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| 20563 |
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PF3D7_1325000 |
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U6 snRNA-associated Sm-like protein LSm6, putative |
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| 20554 |
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PF3D7_1209200 |
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U6 snRNA-associated Sm-like protein LSm7, putative |
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| 20535 |
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PF3D7_0829300 |
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U6 snRNA-associated Sm-like protein LSm8, putative |
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| 20570 |
U1 (initial 5′-ss recognition) |
PF3D7_1367100 |
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U1 small nuclear ribonucleoprotein 70 kda homolog, putative |
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| 20560 |
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PF3D7_1306900 |
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U1 small nuclear ribonucleoprotein A, putative |
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| 20530 |
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PF3D7_0812700 |
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U1 small nuclear ribonucleoprotein c, putative |
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| 20571 |
U2 (BP detection) |
PF3D7_1369700 |
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U2 small nuclear ribonucleoprotein A', putative |
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| 20540 |
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PF3D7_0935000 |
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U2 small nuclear ribonucleoprotein B'', putative |
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| 20550 |
U2-related (BP and poly-Y recognition) |
PF3D7_1119300 |
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splicing factor U2AF small subunit, putative |
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| 20577 |
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PF3D7_1468800 |
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splicing factor U2AF large subunit, putative |
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| 20527 |
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PF3D7_0623600 |
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splicing factor-like protein, putative |
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| 20579 |
SF3a (stability ofU2-BaP interaction) |
PF3D7_1474500 |
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splicing factor 3A subunit 1, putative |
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| 20526 |
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PF3D7_0619900 |
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splicing factor 3A subunit 2, putative |
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| 20538 |
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PF3D7_0924700 |
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splicing factor 3A subunit 3, putative |
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| 20510 |
SF3b (stability of U2-BP interaction) |
PF3D7_0308900 |
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splicing factor 3B subunit 1, putative |
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| 20576 |
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PF3D7_1461600 |
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splicing factor 3B subunit 2, putative |
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| 20558 |
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PF3D7_1234800 |
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splicing factor 3B subunit 3, putative |
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| 20573 |
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PF3D7_1420000 |
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splicing factor 3B subunit 4, putative |
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| 20568 |
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PF3D7_1355800 |
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splicing factor 3B subunit 5, putative |
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| 23691 |
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PF3D7_1018600 |
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trna wybutosine-synthesizing protein, putative |
2.1.1.- |
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| 20556 |
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PF3D7_1224900 |
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splicing factor 3B subunit 6, putative |
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| 20519 |
U5 (catalytic activation of spliceosome) |
PF3D7_0518500 |
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ATP-dependent RNA helicase DDX23, putative |
3.6.4.13 |
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| 20546 |
PF3D7_1031600 |
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gametocyte exported protein 15 conserved Plasmodium protein, unknown function |
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| 25627 |
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PF3D7_1003800 |
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U5 small nuclear ribonucleoprotein component, putative |
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| 20515 |
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PF3D7_0422500 |
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pre-mRNA-splicing helicase BRR2, putative |
3.6.4.13 |
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| 20557 |
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PF3D7_1231500 |
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mitosis protein dim1, putative |
2.1.1.183 |
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| 20513 |
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PF3D7_0405400 |
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pre-mRNA-processing-splicing factor 8, putative |
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| 20549 |
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PF3D7_1110200 |
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pre-mRNA-processing factor 6, putative |
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| 25639 |
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PF3D7_0822800 |
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U5 small nuclear ribonucleoprotein 40 kda protein, putative |
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| 20561 |
U4/U6 (catalytic activation of spliceosome) |
PF3D7_1309300 |
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U4/U6 small nuclear ribonucleoprotein PRP3, putative |
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| 20551 |
PF3D7_1123900 |
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13 kda ribonucleoprotein-associated protein, putative |
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| 20565 |
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PF3D7_1343900 |
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U4/U6 small nuclear ribonucleoprotein PRP4, putative |
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| 20514 |
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PF3D7_0409100 |
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U4/U6 small nuclear ribonucleoprotein PRP31, putative |
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| 20529 |
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PF3D7_0804800 |
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peptidyl-prolyl cis-trans isomerase |
5.2.1.8 |
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| 20511 |
tri-snRNP (activation of spliceosome) |
PF3D7_0323700 |
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U4/U6.U5 tri-snRNP-associated protein 1, putative |
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| 20562 |
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PF3D7_1317000 |
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U4/U6.U5 tri-snRNP-associated protein 2, putative |
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| 25764 |
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PF3D7_0818000 |
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U4/U6.U5 small nuclear ribonucleoprotein, putative |
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| 20509 |
Prp19/CDC5 (specification of U5 and U6 interactions with RNA) |
PF3D7_0308600 |
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pre-mRNA-processing factor 19, putative |
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| 20512 |
PF3D7_0403700 |
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pre-mRNA-splicing factor CLF1, putative |
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| 25517 |
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PF3D7_1033600 |
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pre-mRNA-splicing factor cef1, putative |
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| 20578 |
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PF3D7_1472000 |
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pre-mRNA-splicing factor ISY1, putative |
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| 20752 |
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PF3D7_0614400 |
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pre-mRNA-splicing factor CWF7, putative |
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| 20559 |
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PF3D7_1235900 |
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pre-mRNA-splicing factor SYF1, putative |
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| 20508 |
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PF3D7_0302000 |
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pre-mRNA-splicing factor PRP46, putative |
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| 20507 |
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PF3D7_0218700 |
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pre-mRNA-processing protein 45, putative |
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| 20521 |
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PF3D7_0522800 |
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pre-mRNA-splicing factor BUD31, putative |
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| 20575 |
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PF3D7_1451500 |
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pre-mRNA-splicing factor CWF18, putative |
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| 25674 |
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PF3D7_1352700 |
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intron-binding protein aquarius, putative |
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| 20528 |
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PF3D7_0722500 |
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pre-mRNA-splicing factor CWC15, putative |
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| 25895 |
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PF3D7_1015100 |
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cwc16 domain-containing protein, putative |
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| 20522 |
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PF3D7_0528700 |
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peptidyl-prolyl cis-trans isomerase |
5.2.1.8 |
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| 20545 |
Non-snRNP factors (second step factors) (RNA release) |
PF3D7_1030100 |
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pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22, putative |
3.6.4.13 |
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| 20505 |
PF3D7_0209800 |
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ATP-dependent RNA helicase UAP56 |
3.6.4.13 |
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| 20517 |
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PF3D7_0508700 |
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pre-mRNA-processing ATP-dependent RNA helicase PRP5, putative |
3.6.4.13 |
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| 20524 |
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PF3D7_0610100 |
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pre-mRNA-splicing factor SLU7, putative |
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| 20569 |
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PF3D7_1364300 |
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pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 |
3.6.4.13 |
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| 20555 |
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PF3D7_1220100 |
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pre-mRNA-processing factor 17, putative |
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| 20537 |
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PF3D7_0922700 |
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pre-mRNA-splicing factor 18, putative |
|
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| 20542 |
NMD (detection of nonsense transcripts) |
PF3D7_1005500 |
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regulator of nonsense transcripts 1, putative |
|
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| 20539 |
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PF3D7_0925800 |
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regulator of nonsense transcripts 2, putative |
|
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| 20564 |
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PF3D7_1327700 |
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regulator of nonsense transcripts 3B, putative |
|
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| 20518 |
SR and nRNP |
PF3D7_0517300 |
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serine/arginine-rich splicing factor 1 |
|
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| 20516 |
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PF3D7_0503300 |
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serine/arginine-rich splicing factor 12 |
|
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| 20523 |
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PF3D7_0606500 |
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polypyrimidine tract binding protein, putative |
|
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| 20544 |
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PF3D7_1022400 |
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serine/arginine-rich splicing factor 4 |
|
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| 20752 |
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PF3D7_0614400 |
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pre-mRNA-splicing factor CWF7, putative |
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