Gene expression affected by lumefantrine
Mwai L, Diriye A, Masseno V, Muriithi S, Feltwell T, Musyoki J, Lemieux J, Feller A, Mair GR, Marsh K, Newbold C, Nzila A, Carret CK. Genome wide pressure. PLoS One. 2012;7(2):e31623. PMID: 22384044
Fold increase compared to control
PfID Annotation 0 hr 12 hrs 24 hrs 36 hrs Average EC# Transcript
PF3D7_1001200 acyl-CoA binding protein, isoform 2, ACBP2 3.864 57.282 26.909 16.912 26.242
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PF3D7_1001500
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early transcribed membrane protein 10.1 5.540 52.710 21.857 10.267 22.594
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PF3D7_0731300 Plasmodium exported protein (PHISTb), unknown function 2.585 8.634 6.320 2.969 5.127
PF3D7_1001300
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Plasmodium exported protein (PHISTa), unknown function 1.613 1.778 7.727 1.693 3.203
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PF3D7_1001100 acyl-CoA binding protein, isoform 1, ACBP1 5.502 2.329 1.765 3.117 3.178
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PF3D7_0402000
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Plasmodium exported protein (PHISTa), unknown function 0.829 3.272 5.028 1.959 2.772
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PF3D7_1001600
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exported lipase 2 1.117 1.248 3.891 4.028 2.571 3.1.1.23
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PF3D7_0601600 tetratricopeptide repeat protein, putative 5.897 1.778 0.742 1.424 2.460
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PF3D7_0202100 liver stage associated protein 2 Plasmodium exported protein (PHISTc), unknown function 1.765 2.694 2.056 2.585 2.275
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PF3D7_1479800 rifin 5.502 1.464 1.292 0.356 2.154
PF3D7_0201800
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knob associated heat shock protein 40 2.462 3.294 1.376 1.275 2.102
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PF3D7_0202000
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knob-associated histidine-rich protein 1.693 2.129 2.313 1.670 1.951
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PF3D7_0100200 PIR protein rifin 3.434 1.717 1.149 0.637 1.734
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PF3D7_0731400 serine/threonine protein kinase, FIKK family, pseudogene 1.602 2.313 1.729 1.133 1.694 2.7.11.1
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PF3D7_0223300 erythrocyte membrane protein 1 (PfEMP1), exon 2 2.789 1.366 1.320 0.946 1.605
PF3D7_1101300 rifin 2.969 1.613 1.173 0.633 1.597
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PF3D7_1019900
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autophagy-related protein 8 1.283 1.125 1.385 2.395 1.547
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PF3D7_0200800 erythrocyte membrane protein 1 (PfEMP1), truncated 2.828 1.474 1.214 0.590 1.527
PF3D7_1000400 rifin PIR protein 2.751 1.366 1.173 0.669 1.490
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PF3D7_1301000 rifin, pseudogene 2.969 1.414 1.042 0.521 1.487
PF3D7_0324900
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erythrocyte membrane protein 1, PfEMP1 2.639 1.434 1.149 0.669 1.473
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PF3D7_1452000
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rhoptry neck protein 2 1.214 1.072 0.865 2.585 1.434
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PF3D7_1238600
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sphingomyelin phosphodiesterase 1.214 1.189 1.014 2.297 1.429 3.1.4.12
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PF3D7_0201700 DnaJ protein, putative 1.932 1.189 1.028 1.516 1.416
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PF3D7_0300500 rifin PIR protein 2.603 1.214 1.189 0.655 1.415
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PF3D7_1300600
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rifin PIR protein 2.204 1.474 1.181 0.768 1.407
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PF3D7_1200300 PIR protein rifin 2.395 1.283 1.240 0.707 1.406
PF3D7_1009700 tubulin--tyrosine ligase, putative 1.094 1.064 0.829 2.585 1.393 6.3.2.25
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PF3D7_1040800 PIR protein rifin 2.235 1.292 0.920 0.959 1.352
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PF3D7_0600600 erythrocyte membrane protein 1 (PfEMP1), exon 2 1.495 1.840 1.320 0.747 1.351
PF3D7_0711700 erythrocyte membrane protein 1, PfEMP1 2.158 1.338 1.117 0.758 1.343
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PF3D7_0700100 erythrocyte membrane protein 1, PfEMP1 2.144 1.347 1.133 0.747 1.343
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PF3D7_1478700 Plasmodium exported protein, unknown function, pseudogene 2.479 1.110 1.189 0.566 1.336
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PF3D7_0421100 erythrocyte membrane protein 1, PfEMP1 2.056 1.454 1.125 0.707 1.336
PF3D7_1041300 erythrocyte membrane protein 1, PfEMP1 1.945 1.424 1.197 0.753 1.330
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PF3D7_1255200 erythrocyte membrane protein 1, PfEMP1 2.085 1.404 1.072 0.742 1.326
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PF3D7_0628100
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HECT-domain (ubiquitin-transferase), putative 1.141 1.072 0.908 2.158 1.320 6.3.2.19
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PF3D7_1400300 rifin 1.959 1.338 1.035 0.933 1.316
PF3D7_1235200
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V-type K+-independent H+-translocating inorganic pyrophosphatase, VP2 1.173 1.206 0.895 1.972 1.312 3.6.1.1
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PF3D7_0522500 50S ribosomal protein L17, apicoplast, putative 2.000 1.240 1.117 0.779 1.284
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PF3D7_0101900 PIR protein rifin 1.972 1.197 1.157 0.779 1.276
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PF3D7_0101000 rifin PIR protein 2.056 1.206 1.149 0.693 1.276
PF3D7_1252100
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rhoptry neck protein 3 1.141 1.165 0.933 1.803 1.260
PF3D7_1240600
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erythrocyte membrane protein 1, PfEMP1 1.790 1.283 1.102 0.818 1.248
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PF3D7_0936700 lysophospholipase, putative 1.879 1.072 1.125 0.865 1.235 3.1.1.5
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PF3D7_0412700
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erythrocyte membrane protein 1, PfEMP1 1.803 1.214 1.087 0.812 1.229
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PF3D7_0802600
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Adenylyl cyclase, Acb 1.094 1.050 0.853 1.919 1.229 4.6.1.1
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PF3D7_0717500
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calcium-dependent protein kinase 4, CDPK4 0.908 1.223 0.901 1.879 1.228 2.7.11.1
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PF3D7_0923500
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cyclin-dependent kinases regulatory subunit, putative 1.266 0.812 1.000 1.765 1.211 3.6.5.2
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PF3D7_0907400
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ATP-dependent protease ATPase subunit ClpY 0.895 1.072 1.181 1.670 1.204
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PF3D7_1373500 erythrocyte membrane protein 1, PfEMP1 1.591 1.283 1.087 0.847 1.202
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PF3D7_0319000 P-type ATPase, putative 1.257 0.835 1.094 1.613 1.200 3.6.3.1
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PF3D7_0916000
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major facilitator superfamily domain-containing protein, MFS2 1.157 1.125 0.993 1.516 1.198
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PF3D7_0100100
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erythrocyte membrane protein 1, PfEMP1 1.815 1.149 1.028 0.779 1.193
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PF3D7_0815800 vacuolar protein sorting-associated protein 9, putative 1.117 1.000 1.028 1.613 1.190
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PF3D7_1116500
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folate transporter 2 FT2 0.646 0.895 1.424 1.790 1.189
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PF3D7_1354200
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phosphoinositide phosphatase sac1 0.953 1.110 1.050 1.613 1.181 3.1.3.56
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PF3D7_1000500 rifin PIR protein 1.636 1.165 1.050 0.812 1.166
PF3D7_0712900 erythrocyte membrane protein 1, PfEMP1 1.569 1.181 1.072 0.829 1.163
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PF3D7_0508500 guanidine nucleotide exchange factor 1.117 1.035 0.901 1.558 1.153
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PF3D7_0112200
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multidrug resistance-associated protein 1 MRP1 0.946 0.796 1.591 1.248 1.145 3.6.3.44
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PF3D7_0300100 erythrocyte membrane protein 1, PfEMP1 1.558 1.133 1.050 0.835 1.144
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PF3D7_1414500
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atypical protein kinase, ABC-1 family, putative 0.979 1.050 0.973 1.548 1.137 1.14.13.-
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PF3D7_1304000 condensin complex subunit 2, putative 1.087 0.847 1.035 1.548 1.129
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PF3D7_1145200 serine/threonine protein kinase, putative 1.102 1.007 0.841 1.505 1.114 2.7.11.1
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PF3D7_0918800 dihydrouridine synthase, putative 1.214 1.189 1.125 0.497 1.006 1.3.1.42
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PF3D7_1309100 60S ribosomal protein L24, putative 0.624 1.141 1.057 1.064 0.972
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PF3D7_1315400 zinc finger (CCCH type) protein, putative 0.574 0.986 1.072 1.206 0.960
PF3D7_0927900
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phosphatidylserine decarboxylase 0.586 1.021 0.914 1.301 0.956 4.1.1.65
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PF3D7_1338100 26S proteasome regulatory subunit RPN3, putative 0.511 0.933 0.966 1.338 0.937
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PF3D7_1401800
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choline kinase 0.374 0.908 1.028 1.434 0.936 2.7.1.32
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PF3D7_0209800
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ATP-dependent RNA helicase UAP56 0.616 1.149 1.057 0.908 0.932 3.6.4.13
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PF3D7_0309500 asparagine synthetase [glutamine-hydrolyzing], putative 0.607 1.102 1.173 0.812 0.924 6.3.5.4
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PF3D7_1354400 V-type proton ATPase 21 kDa proteolipid subunit, putative 0.555 0.824 1.057 1.248 0.921 3.6.3.14
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PF3D7_1358100 sas10 domain-containing protein, putative 0.655 0.895 0.986 1.050 0.897
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PF3D7_1234100 bromodomain protein, putative 0.669 0.847 0.953 1.117 0.896
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PF3D7_1010700 dolichyl-phosphate-mannose-protein mannosyltransferase, putative 0.620 0.927 1.007 1.028 0.895 2.4.1.109
PF3D7_0308000 DNA polymerase delta small subunit, putative 1.007 0.566 0.973 1.035 0.895 2.7.7.7
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PF3D7_1144600 transcription initiation factor IIF subunit beta, putative 0.651 1.057 0.973 0.883 0.891
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PF3D7_0725200 mago nashi protein homologue, putative 0.536 0.966 1.000 1.057 0.890
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PF3D7_0515800
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BolA-like protein, putative 0.540 0.824 1.064 1.117 0.886
PF3D7_1143400 translation initiation factor eIF-1A, putative 0.633 0.920 0.953 1.035 0.885
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PF3D7_0512000 prefoldin subunit 6, putative 0.664 0.853 0.993 1.021 0.883
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PF3D7_0823900
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dicarboxylate/tricarboxylate carrier, DTC 0.356 0.529 1.079 1.537 0.875
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PF3D7_1357800
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T-complex protein 1 subunit delta 0.646 0.966 1.087 0.801 0.875
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PF3D7_1314900
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general transcription factor IIH subunit 2 0.655 0.889 1.064 0.889 0.874
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PF3D7_0408900
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tRNA N6-adenosine threonylcarbamoyltransferase 0.966 0.620 0.901 1.000 0.872 2.6.99.4
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PF3D7_1013000 zinc finger protein, putative 0.669 0.973 0.908 0.933 0.871
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PF3D7_0501100
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heat shock protein 40, type II 0.883 1.110 0.959 0.514 0.866
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PF3D7_0517700 eukaryotic translation initiation factor 3 subunit B, putative 0.651 0.914 1.102 0.796 0.865
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PF3D7_1104000
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phenylalanine--tRNA ligase beta subunit 0.633 0.807 1.007 1.014 0.865 6.1.1.20
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PF3D7_0205500 DNA-directed RNA polymerase II 16 kDa subunit, putative 0.603 1.079 0.914 0.853 0.862 2.7.7.6
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PF3D7_0721600 40S ribosomal protein S5, putative 0.480 1.064 1.125 0.779 0.862
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PF3D7_1356200 mitochondrial import inner membrane translocase subunit TIM23, putative 0.521 0.742 1.173 1.000 0.859
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PF3D7_0316600
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formate-nitrite transporter, FNT 0.532 0.889 1.028 0.986 0.859
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PF3D7_1138800 WD repeat-containing protein, putative 0.633 0.973 0.895 0.933 0.858
PF3D7_0804000 cactin homolog, putative 0.642 0.914 1.007 0.871 0.858
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PF3D7_1446200
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M17 leucyl aminopeptidase 0.525 0.865 1.240 0.790 0.855 3.4.11.1
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PF3D7_1103100
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60S acidic ribosomal protein P1, putative 0.660 0.818 0.946 0.986 0.852
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PF3D7_1445200 ATP-dependent RNA helicase MAK5, putative 0.555 0.986 0.973 0.889 0.851 3.6.4.13
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PF3D7_0505800
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small ubiquitin-related modifier 0.463 0.818 0.901 1.197 0.845
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PF3D7_0417300 LETM1-like protein, putative 0.551 1.007 0.959 0.859 0.844
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PF3D7_0803800
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proteasome subunit beta type-4 0.390 0.901 0.859 1.223 0.843 3.4.25.1
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PF3D7_0829300 U6 snRNA-associated Sm-like protein LSm8, putative 0.590 1.072 0.959 0.737 0.840
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PF3D7_1247400
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peptidyl-prolyl cis-trans isomerase fkbp 0.366 0.633 0.993 1.366 0.840 5.2.1.8
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PF3D7_1317900 nucleolar complex protein 4, putative 0.529 0.986 0.959 0.871 0.836
PF3D7_0320300 T-complex protein 1 subunit epsilon 0.607 0.768 1.007 0.946 0.832
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PF3D7_1309500 H/ACA ribonucleoprotein complex subunit 1, putative 0.669 0.871 0.914 0.859 0.828
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PF3D7_0524900 S-adenosyl-l-methionine-dependent trna 4-demethylwyosine synthase, putative 0.514 0.986 0.953 0.853 0.826
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PF3D7_1465900 40S ribosomal protein S3 0.603 0.889 1.028 0.774 0.823
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PF3D7_0306700 ER membrane protein complex subunit 5, putative 0.582 0.986 0.933 0.790 0.823
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PF3D7_1424400 60S ribosomal protein L7-3, putative 0.500 0.933 0.966 0.889 0.822
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PF3D7_1338300 elongation factor 1-gamma, putative 0.551 0.877 1.000 0.853 0.820
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PF3D7_1016400
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serine/threonine protein kinase, FIKK family 0.547 0.859 1.050 0.824 0.820 2.7.11.1
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PF3D7_1315600
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CDP-diacylglycerol--inositol 3-phosphatidyltransferase phosphatidylinositol synthase 0.547 0.651 0.841 1.223 0.815 2.7.8.11
PF3D7_1426200
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protein arginine N-methyltransferase 1 0.463 0.829 0.973 0.986 0.813 2.1.1.125
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PF3D7_0520600
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bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] Ap4A hydrolase 0.507 0.940 0.979 0.824 0.812 3.6.1.17
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PF3D7_1408100
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plasmepsin III histo-aspartic protease 0.582 0.883 1.007 0.768 0.810 3.4.23.-
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PF3D7_1444700 shikimate dehydrogenase, putative 0.480 0.763 1.050 0.933 0.806 1.1.1.25
PF3D7_0914700
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apicomplexan amino acid transporter apiat2, putative 0.993 0.753 0.877 0.586 0.802
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PF3D7_1353800 proteasome subunit alpha type-4, putative 0.611 0.722 0.829 1.042 0.801 3.4.25.1
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PF3D7_1323000
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beta-hydroxyacyl-ACP dehydratase 0.248 1.133 0.993 0.829 0.801 4.2.1.59
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PF3D7_1444800
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fructose-bisphosphate aldolase 0.451 0.801 0.940 1.007 0.800 4.1.2.13
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PF3D7_0526900 transmembrane emp24 domain-containing protein, putative 0.547 0.920 0.966 0.763 0.799
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PF3D7_1027100 U3 small nucleolar ribonucleoprotein protein MPP10, putative 0.540 0.774 0.908 0.966 0.797
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PF3D7_0807300
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ras-related protein Rab-18 0.486 0.946 0.841 0.901 0.794 3.6.5.2
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PF3D7_0932300
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M18 aspartyl aminopeptidase 0.252 0.683 1.117 1.117 0.792 3.4.11.21
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PF3D7_0527500
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Hsc70-interacting protein 0.642 0.697 0.946 0.883 0.792
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PF3D7_1026800
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40S ribosomal protein S2 0.532 0.933 0.979 0.707 0.788
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PF3D7_1448800 Appr-1-p processing domain protein 0.669 0.660 0.812 1.000 0.785 3.6.1.13
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PF3D7_0823700 mitochondrial import receptor subunit TOM7, putative 0.454 0.859 0.927 0.895 0.783
PF3D7_0501000 Plasmodium exported protein, unknown function 0.454 0.871 0.959 0.824 0.777
PF3D7_0814900
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superoxide dismutase [Fe] 0.448 0.642 0.920 1.094 0.776 1.15.1.1
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PF3D7_0206600 DNA-directed RNA polymerase III subunit RPC10, putative 0.289 0.973 0.889 0.953 0.776
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PF3D7_1033200
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early transcribed membrane protein 10.2 0.366 0.979 0.702 1.028 0.769
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PF3D7_0819100 BRIX domain, putative 0.486 0.812 0.966 0.796 0.765
PF3D7_1368600 mitochondrial import inner membrane translocase subunit TIM9, putative 0.264 0.758 1.173 0.859 0.763
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PF3D7_0713400
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GPCR-like receptor sr25; serpentine receptor SR25 0.616 0.812 0.812 0.790 0.758
PF3D7_0923900 polyadenylate-binding protein 2, putative 0.578 0.807 0.768 0.835 0.747
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PF3D7_0512700
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orotate phosphoribosyltransferase 0.314 0.712 1.102 0.847 0.744 2.4.2.10
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PF3D7_0705700 40S ribosomal protein S29, putative 0.314 1.223 0.901 0.507 0.736
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PF3D7_0213100
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protein SIS1 0.559 0.727 0.835 0.818 0.735
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PF3D7_1037300
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ADP/ATP transporter on adenylate translocase 0.503 0.732 0.973 0.717 0.731
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PF3D7_0424000
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Plasmodium exported protein (PHISTc), unknown function 0.240 0.768 0.895 0.920 0.706
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PF3D7_1357100 elongation factor 1-alpha 0.403 0.678 0.801 0.829 0.678
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PF3D7_0502800 DnaJ protein, putative 0.555 0.796 0.946 0.344 0.660
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PF3D7_0215900 palmitoyltransferase, putative 0.702 0.563 0.448 0.758 0.618 2.3.1.-
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PF3D7_0115100 Plasmodium exported protein (PHISTa), unknown function 0.763 0.354 0.441 0.707 0.566
PF3D7_0112900 Plasmodium exported protein, unknown function 0.646 0.871 0.683 0.053 0.563
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+32 conserved Plasmodium proteins of unknown function
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