Copy number variation (CNV) genes
Cheeseman IH, Gomez-Escobar N, Carret CK, Ivens A, Stewart LB, Tetteh KK, Conway DJ. Gene copy number variation throughout the Plasmodium falciparum genome. BMC Genomics. 2009 Aug 4;10:353. PMID: 19653891
CNV genes present in a single strain are highlghted in grey
PfID Annotation Amplifications Deletions total CNVs Chr
PF3D7_0100500 erythrocyte membrane protein 1 (PfEMP1), exon 1, pseudogene 1 2 3 1
PF3D7_0100700 Plasmodium exported protein, unknown function, fragment 1 0 1 1
PF3D7_0101900 PIR protein rifin 1 0 1 1
PF3D7_0102400 lysophospholipase, putative, pseudogene 0 1 1 1
 PF3D7_0102600
serine/threonine protein kinase, FIKK family 0 1 1 1
PF3D7_0108500 elm2 domain-containing protein, putative 1 0 1 1
PF3D7_0114100
Pfmc-2TM Maurer's cleft two transmembrane protein 1 0 1 1
PF3D7_0115100 Plasmodium exported protein (PHISTa), unknown function 0 1 1 1
 PF3D7_0115500 erythrocyte membrane protein 1 (PfEMP1), pseudogene 1 0 1 1
PF3D7_0115600 PIR protein rifin 1 0 1 1
PF3D7_0200800 erythrocyte membrane protein 1 (PfEMP1), truncated 5 3 8 2
PF3D7_0201400 Plasmodium exported protein (hyp10), unknown function 1 3 4 2
PF3D7_0201600
PHISTb domain-containing RESA-like protein 1 0 3 3 2
PF3D7_0201700 DnaJ protein, putative 0 4 4 2
PF3D7_0201800
knob associated heat shock protein 40 0 2 2 2
PF3D7_0202100 liver stage associated protein 2 Plasmodium exported protein (PHISTc), unknown function 0 2 2 2
PF3D7_0221100 Plasmodium exported protein, unknown function, pseudogene 0 1 1 2
PF3D7_0221200 Plasmodium exported protein (hyp15), unknown function 0 1 1 2
PF3D7_0221300 Plasmodium exported protein, unknown function, pseudogene 0 1 1 2
PF3D7_0221400 PIR protein stevor 0 1 1 2
PF3D7_0221600 Plasmodium exported protein, unknown function, pseudogene 0 1 1 2
PF3D7_0221700 Plasmodium exported protein, unknown function 0 2 2 2
 PF3D7_0221900 erythrocyte membrane protein 1 (PfEMP1), pseudogene 0 1 1 2
PF3D7_0221900 erythrocyte membrane protein 1 (PfEMP1), pseudogene 2 2 4 2
PF3D7_0222100
Pfmc-2TM Maurer's cleft two transmembrane protein 2 0 2 2
PF3D7_0222300 exported protein family 4, pseudogene 0 2 2 2
PF3D7_0222400 rifin, pseudogene 1 0 1 2
PF3D7_0222500 rifin PIR protein 1 0 1 2
PF3D7_0222900 erythrocyte membrane protein 1 (PfEMP1), exon 2, pseudogene 3 0 3 2
PF3D7_0222900 erythrocyte membrane protein 1 (PfEMP1), exon 2, pseudogene 2 0 2 2
PF3D7_0223300 erythrocyte membrane protein 1 (PfEMP1), exon 2 1 0 1 2
 PF3D7_0300300 erythrocyte membrane protein 1 (PfEMP1), exon 2, pseudogene 2 1 3 3
PF3D7_0300800 rifin PIR protein 3 0 3 3
PF3D7_0300900 stevor 0 1 1 3
PF3D7_0309600
60S acidic ribosomal protein P2 0 3 3 3
PF3D7_0311500 conserved Plasmodium protein, unknown function 0 1 1 3
PF3D7_0319100 E3 ubiquitin-protein ligase RBX1, putative 0 1 1 3
 PF3D7_0323900 erythrocyte membrane protein 1 (PfEMP1), exon 2, pseudogene 1 0 1 3
PF3D7_0324100 Pfmc-2TM Maurer's cleft two transmembrane protein 0 1 1 3
PF3D7_0324600
PIR protein stevor 1 0 1 3
PF3D7_0400900 rifin 1 0 1 4
 PF3D7_0401400 rifin 1 0 1 4
PF3D7_0402700 rifin, pseudogene 0 1 1 4
PF3D7_0407400 conserved Plasmodium protein, unknown function 0 1 1 4
PF3D7_0412000 LITAF-like zinc finger protein, putative 1 0 1 4
PF3D7_0420900 erythrocyte membrane protein 1, PfEMP1 6 4 10 4
PF3D7_0421900
conserved Plasmodium protein, unknown function 0 1 1 4
 PF3D7_0425000 Plasmodium exported protein, unknown function, pseudogene 1 0 1 4
 PF3D7_0425100 Plasmodium exported protein (hyp6), unknown function 2 0 2 4
PF3D7_0500700 rifin, pseudogene 0 1 1 5
PF3D7_0501300
skeleton-binding protein 1 0 2 2 5
PF3D7_0501400 interspersed repeat antigen 0 3 3 5
PF3D7_0521900 conserved Plasmodium protein, unknown function 1 0 1 5
PF3D7_0522000 conserved Plasmodium protein, unknown function 2 0 2 5
PF3D7_0522100 conserved Plasmodium protein, unknown function 2 0 2 5
 PF3D7_0522200 transcription initiation factor TFIID subunit 10, putative 1 0 1 5
PF3D7_0522300
S-adenosylmethionine-dependent methyltransferase, putative 2 0 2 5
PF3D7_0522400 conserved Plasmodium protein, unknown function 1 0 1 5
PF3D7_0522500 50S ribosomal protein L17, apicoplast, putative 2 0 2 5
PF3D7_0522600
magnesium transporter NIPA, putative 2 0 2 5
PF3D7_0522700 iron-sulfur cluster assembly protein SUFA 2 0 2 5
PF3D7_0522800 pre-mRNA-splicing factor BUD31, putative 1 0 1 5
PF3D7_0522900 zinc finger protein, putative 1 0 1 5
PF3D7_0523000
multidrug resistance protein 1. MDR1 2 0 2 5
PF3D7_0523100 cytochrome b-c1 complex subunit 2, putative 1 0 1 5
PF3D7_0523200 heptatricopeptide repeat-containing protein, putative 1 0 1 5
PF3D7_0524700
mitochondrial import receptor subunit TOM22, putative 1 0 1 5
PF3D7_0532100
early transcribed membrane protein 5 0 1 1 5
PF3D7_0532700 erythrocyte membrane protein 1 (PfEMP1), pseudogene 1 0 1 5
PF3D7_0600100 erythrocyte membrane protein 1 (PfEMP1), pseudogene 1 0 1 6
PF3D7_0601600 tetratricopeptide repeat protein, putative 1 0 1 6
PF3D7_0610400
histone H3 1 1 2 6
PF3D7_0617800
histone H2A 1 1 2 6
PF3D7_0631000 tetratricopeptide repeat protein, putative 1 0 1 6
PF3D7_0632000 rifin 1 0 1 6
PF3D7_0632100 rifin 3 0 3 6
PF3D7_0632600 rifin, pseudogene 4 0 4 6
PF3D7_0732100 erythrocyte membrane protein 1 (PfEMP1), pseudogene 2 0 2 7
 PF3D7_0732800 erythrocyte membrane protein 1 (PfEMP1), exon 2 1 0 1 7
PF3D7_0833500 erythrocyte membrane protein 1, PfEMP1 3 1 4 7
PF3D7_0706400 60S ribosomal protein L37 1 1 2 7
PF3D7_0701600 Pfmc-2TM Maurer's cleft two transmembrane protein 1 0 1 7
PF3D7_0702000 Plasmodium exported protein (hyp12), unknown function 0 1 1 7
 PF3D7_0715500
ATP synthase subunit epsilon, mitochondrial, putative 1 0 1 7
PF3D7_0701700 exported protein family 1 2 4 6 7
PF3D7_0702200
lysophospholipase lpl20 0 1 1 7
PF3D7_0708100 DNA-directed RNA polymerases I, II, and III subunit RPABC5, putative 0 1 1 7
PF3D7_0722700 espiratory chain complex 3 associated protein 1 0 1 1 7
PF3D7_0732900 PIR protein rifin 1 0 1 7
PF3D7_0800600 Plasmodium exported protein (PHISTa), unknown function 2 0 2 8
PF3D7_0825600 cytochrome c oxidase assembly factor 5, putative 1 0 1 8
PF3D7_0817800 respiratory chain complex 3 associated protein 3 1 0 1 8
PF3D7_0814200
DNA/RNA-binding protein Alba 1 0 2 2 8
PF3D7_0805200 IMC-associated apicomplexan protein, putative gamete release protein, putative 1 0 1 8
PF3D7_0900500 rifin 1 0 1 9
PF3D7_0901200 Plasmodium exported protein, unknown function, fragment 2 2 4 9
PF3D7_0912700 conserved Plasmodium protein, unknown function 1 0 1 9
PF3D7_0916100
thioredoxin 3 1 0 1 9
PF3D7_0928600 conserved Plasmodium protein, unknown function 0 1 1 9
PF3D7_0935600 gametocytogenesis-implicated protein 0 2 2 9
PF3D7_0935700 Plasmodium exported protein, unknown function 0 3 3 9
PF3D7_0935800
cytoadherence linked asexual protein 9 0 1 1 9
PF3D7_0936000
ring-exported protein 2 0 5 5 9
PF3D7_0936100 early transcribed membrane protein 1 7 8 9
PF3D7_0936300
ring-exported protein 3 0 2 2 9
 PF3D7_0936400
ring-exported protein 4 2 7 9 9
 PF3D7_0936800
Plasmodium exported protein (PHISTc), unknown function 0 3 3 9
PF3D7_0936900 Plasmodium exported protein (PHISTb), unknown function, pseudogene 7 0 7 9
PF3D7_0937100 Plasmodium exported protein, unknown function 3 0 3 9
PF3D7_1000700 Plasmodium exported protein (PHISTa), unknown function, pseudogene 0 1 1 10
PF3D7_1000700 Plasmodium exported protein (PHISTa), unknown function, pseudogene 0 3 3 10
 PF3D7_1007600 conserved Plasmodium protein, unknown function 0 1 1 10
PF3D7_1039600 exported protein family 1, pseudogene 1 0 1 10
PF3D7_1039700
Pfmc-2TM Maurer's cleft two transmembrane protein 1 0 1 10
PF3D7_1040100 rifin 1 0 1 10
PF3D7_1040500 rifin 1 0 1 10
PF3D7_1040600 rifin 1 0 1 10
PF3D7_1101300 rifin 1 0 1 11
PF3D7_1101700
Pfmc-2TM Maurer's cleft two transmembrane protein 5 6 11 11
PF3D7_1102800 early transcribed membrane protein 11.2 0 2 2 11
 PF3D7_1105000
histone H4 0 3 3 11
PF3D7_1109900 60S ribosomal protein L36 0 1 1 11
PF3D7_1112900 conserved protein, unknown function 0 1 1 11
PF3D7_1133000 conserved Plasmodium protein, unknown function 1 1 2 11
PF3D7_1141200 ATP synthase-associated protein 1 0 1 11
PF3D7_1144000 40S ribosomal protein S21 1 0 1 11
PF3D7_1148800 Plasmodium exported protein (hyp11), unknown function 1 0 1 11
PF3D7_1149700 Plasmodium exported protein (PHISTa), unknown function 1 1 2 11
PF3D7_1115100 conserved Plasmodium protein, unknown function 0 1 1 11
PF3D7_1219800 conserved Plasmodium protein, unknown function 1 0 1 12
PF3D7_1223600 conserved Plasmodium protein, unknown function 1 0 1 12
PF3D7_1223700 vacuolar iron transporter. VIT 1 0 1 12
PF3D7_1223800 citrate/oxoglutarate carrier protein, putative 2 0 2 12
PF3D7_1223900 50S ribosomal protein L24, putative 2 0 2 12
PF3D7_1253100 Plasmodium exported protein (PHISTa), unknown function 0 1 1 12
PF3D7_1253200 hypothetical protein 0 1 1 12
PF3D7_1253300 Plasmodium exported protein (PHISTa), unknown function, pseudogene 0 2 2 12
PF3D7_1253500 Plasmodium exported protein, unknown function 1 3 4 12
PF3D7_1253800 Plasmodium exported protein (PHISTa), unknown function 6 2 8 12
PF3D7_1253900 Plasmodium exported protein (PHISTa), unknown function, pseudogene 1 0 1 12
PF3D7_1372500 stevor, pseudogene 0 1 1 13
PF3D7_1372900 erythrocyte membrane protein 1 (PfEMP1), exon 2, pseudogene 4 0 4 13
PF3D7_1301300 Plasmodium exported protein (PHISTa-like), unknown function, pseudogene 0 3 3 13
 PF3D7_1301700
cx3cl1-binding protein 2, gametocyte exported protein 7, GEXP7 0 2 2 13
PF3D7_1301000 rifin, pseudogene 2 0 2 13
PF3D7_1301200 glycophorin binding protein 0 3 3 13
PF3D7_1302000
EMP1-trafficking protein 0 1 1 13
PF3D7_1341200 60S ribosomal protein L18, putative 0 1 1 13
PF3D7_1357100 elongation factor 1-alpha 0 1 1 13
PF3D7_1366000 conserved Plasmodium protein, unknown function 1 0 1 13
PF3D7_1401000 GBPH protein 0 3 3 14
PF3D7_1401100 DnaJ protein, putative 0 1 1 14
PF3D7_1404300
secreted ookinete adhesive protein, putative 0 1 1 14
PF3D7_1420000 splicing factor 3B subunit 4, putative 0 1 1 14
PF3D7_1435900 conserved Plasmodium protein, unknown function 1 0 1 14
PF3D7_1462000
thioredoxin-like protein 0 2 2 14
PF3D7_1462200 conserved Plasmodium protein, unknown function 2 0 2 14
PF3D7_1476400 serine/threonine protein kinase, FIKK family, pseudogene 0 1 1 14
PF3D7_1477100 Plasmodium exported protein (hyp6), unknown function 0 1 1 14
PF3D7_1479100 Plasmodium exported protein, unknown function 4 0 4 14
PF3D7_1479200 Plasmodium exported protein (PHISTa), unknown function 4 4 8 14
Online articles related to Copy number variation (CNV) genes retrieved from PubMed