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Doxycycline - effect of drug on gene transcription |
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Siwo GH, Smith RS, Tan A, Button-Simons KA, Checkley LA, Ferdig MT. An integrative analysis of small molecule transcriptional responses in the human malaria parasite Plasmodium falciparum. BMC Genomics. 2015 Dec 4;16:1030.PMID: 26637195 |
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Ratio = Transcript of treated vs untreated control |
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PfID |
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Annotation |
Ratio |
E.C |
Transcript |
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| 32203 |
PF3D7_1022700 |
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phospholipid scramblase, plscr |
1.509 |
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| 32227 |
PF3D7_1301500 |
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Plasmodium exported protein (PHISTa), unknown function |
1.423 |
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| 32150 |
PF3D7_0221800 |
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hypothetical protein |
1.403 |
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| 32213 |
PF3D7_1138100 |
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ubiquitin-related modifier 1, putative |
1.388 |
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| 32173 |
PF3D7_0506600 |
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histone deacetylase, putative, pseudogene |
1.346 |
3.5.1.98 |
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| 32211 |
PF3D7_1102400 |
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phosphopantothenate-cysteine ligase, putative |
1.343 |
6.3.2.5 |
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| 32216 |
PF3D7_1206400 |
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thiosulfate sulfurtransferase, putative |
1.342 |
2.8.1.1 |
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| 32212 |
PF3D7_1130800 |
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armadillo repeat protein PF16, putative |
1.336 |
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| 32178 |
PF3D7_0601400 |
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erythrocyte membrane protein 1 (PfEMP1), pseudogene |
1.313 |
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| 32197 |
PF3D7_0902400 |
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serine/threonine protein kinase, FIKK family |
1.310 |
2.7.11.1 |
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| 32242 |
PF3D7_1458400 |
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aminodeoxychorismate lyase |
1.306 |
4.1.3.38 |
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| 32243 |
PF3D7_1471000 |
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RNA 3'-terminal phosphate cyclase-like protein, putative |
1.304 |
6.5.1.4 |
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| 33630 |
PF3D7_0217300 |
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AP2S |
1.301 |
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| 32239 |
PF3D7_1451500 |
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pre-mRNA-splicing factor CWF18, putative |
1.296 |
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| 32226 |
PF3D7_1301300 |
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Plasmodium exported protein (PHISTa-like), unknown function, pseudogene |
1.291 |
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| 32174 |
PF3D7_0511600 |
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apical rhoptry neck protein |
1.284 |
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| 32228 |
PF3D7_1313200 |
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methionyl-tRNA formyltransferase, putative |
1.284 |
2.1.2.9 |
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| 32220 |
PF3D7_1253100 |
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Plasmodium exported protein (PHISTa), unknown function |
1.279 |
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| 32240 |
PF3D7_1456000 |
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AP2 domain transcription factorAP2-HC |
1.278 |
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| 32244 |
PF3D7_1341000 |
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tRNA Arginine |
1.274 |
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| 32193 |
PF3D7_0819100 |
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BRIX domain, putative |
1.272 |
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| 32180 |
PF3D7_0602800 |
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jmjc domain-containing protein 2, putative |
1.272 |
1.14.11.27 |
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| 32258 |
PF3D7_0731000 |
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ncRNA |
1.268 |
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| 32241 |
PF3D7_1456200 |
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conserved Plasmodium protein, unknown function |
1.266 |
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| 32172 |
PF3D7_0506200 |
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TATA-box-binding protein |
1.260 |
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| 32205 |
PF3D7_1035000 |
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U2 snRNA/tRNA pseudouridine synthase, putative |
1.255 |
5.4.99.12 |
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| 32192 |
PF3D7_0807700 |
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serine protease DegP |
1.255 |
3.4.21.- |
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| 32236 |
PF3D7_1420300 |
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DNL-type zinc finger protein; hsp70-escort protein 1 |
1.252 |
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| 32229 |
PF3D7_1339800 |
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mitotic-spindle organizing protein 1, putative |
1.248 |
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| 32231 |
PF3D7_1349100 |
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nucleoside diphosphate hydrolase, putative |
1.248 |
3.6.1.6 |
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| 32154 |
PF3D7_0317100 |
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6-cysteine protein |
1.247 |
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| 32189 |
PF3D7_0708300 |
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EKC/KEOPS complex subunit BUD32 |
1.241 |
2.7.11.2 |
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| 32167 |
PF3D7_0424900 |
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Plasmodium exported protein (PHISTa), unknown function |
1.241 |
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| 32147 |
PF3D7_0208900 |
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6-cysteine protein |
1.240 |
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| 32198 |
PF3D7_0919500 |
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major facilitator superfamily domain-containing protein, MFS3 |
1.235 |
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| 32256 |
PF3D7_1139000 |
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ncRNA |
1.235 |
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| 32237 |
PF3D7_1436900 |
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histidine triad protein, putative |
1.235 |
3.6.1.29 |
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| 32175 |
PF3D7_0521800 |
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afg1-like atpase, putative |
1.231 |
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| 32232 |
PF3D7_1355300 |
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histone-lysine N-methyltransferase, putative |
1.231 |
2.1.1.43 |
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| 38882 |
PF3D7_0104700 |
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apicomplexan amino acid transporter apiat9, putative |
0.732 |
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| 32200 |
PF3D7_0937800 |
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erythrocyte membrane protein 1, PfEMP1 |
0.732 |
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| 32141 |
PF3D7_0101700 |
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erythrocyte membrane protein 1 (PfEMP1), exon 2, pseudogene |
0.730 |
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| 32157 |
PF3D7_0400500 |
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rifin PIR protein |
0.730 |
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| 32149 |
PF3D7_0221500 |
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Pfmc-2TM Maurer's cleft two transmembrane protein, pseudogene |
0.730 |
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| 32185 |
PF3D7_0700100 |
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erythrocyte membrane protein 1, PfEMP1 |
0.728 |
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| 32217 |
PF3D7_1240200 |
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erythrocyte membrane protein 1 (PfEMP1), pseudogene |
0.728 |
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| 32257 |
PF3D7_0620900 |
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tRNA Leucine |
0.728 |
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| 32196 |
PF3D7_0833100 |
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rifin PIR protein |
0.727 |
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| 32207 |
PF3D7_1040400 |
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rifin |
0.726 |
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| 32144 |
PF3D7_0114700 |
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rifin PIR protein |
0.725 |
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| 32160 |
PF3D7_0401200 |
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rifin |
0.725 |
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| 32145 |
PF3D7_0200800 |
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erythrocyte membrane protein 1 (PfEMP1), truncated |
0.725 |
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| 32255 |
PF3D7_0714800 |
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tRNA Leucine |
0.724 |
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| 32214 |
PF3D7_1150100 |
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rifin, pseudogene |
0.724 |
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| 32190 |
PF3D7_0713000 |
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rifin PIR protein |
0.724 |
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| 32168 |
PF3D7_0425600 |
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rifin, pseudogene |
0.723 |
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| 32204 |
PF3D7_1027600 |
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meiotic recombination protein spo11-2, putative |
0.723 |
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| 32221 |
PF3D7_1254300 |
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PIR protein stevor |
0.723 |
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| 32218 |
PF3D7_1240400 |
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erythrocyte membrane protein 1, PfEMP1 |
0.722 |
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| 32163 |
PF3D7_0413100 |
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erythrocyte membrane protein 1, PfEMP1 |
0.721 |
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| 32224 |
PF3D7_1300900 |
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PIR protein stevor |
0.718 |
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| 32246 |
PF3D7_1371200 |
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5.8S |
0.716 |
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| 32219 |
PF3D7_1240700 |
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rifin, pseudogene |
0.716 |
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| 32165 |
PF3D7_0421500 |
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rifin, pseudogene |
0.716 |
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| 32186 |
PF3D7_0700200 |
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PIR protein rifin |
0.715 |
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| 32254 |
PF3D7_1355400 |
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tRNA Threonine |
0.715 |
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| 32151 |
PF3D7_0303600 |
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plasmoredoxin |
0.713 |
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| 32177 |
PF3D7_0600300 |
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rifin |
0.713 |
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| 32230 |
PF3D7_1340800 |
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mitochondrial pyruvate carrier protein 1, putative, MPC1 |
0.712 |
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| 32143 |
PF3D7_0113600 |
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surface-associated interspersed protein 1.2 (SURFIN 1.2), pseudogene |
0.711 |
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| 32209 |
PF3D7_1100700 |
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stevor, pseudogene |
0.710 |
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| 32166 |
PF3D7_0424400 |
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surface-associated interspersed protein 4.2 (SURFIN 4.2) |
0.708 |
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| 32169 |
PF3D7_0425700 |
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rifin PIR protein |
0.708 |
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| 32187 |
PF3D7_0700300 |
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rifin |
0.706 |
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| 32146 |
PF3D7_0200900 |
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stevor, pseudogene |
0.706 |
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| 32183 |
PF3D7_0628100 |
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hect domain-containing protein 1, putative |
0.704 |
6.3.2.19 |
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| 32194 |
PF3D7_0832400 |
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PIR protein stevor |
0.702 |
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|
|
|
|
| 32176 |
PF3D7_0532900 |
|
|
PIR protein rifin |
0.701 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32208 |
PF3D7_1100400 |
|
|
rifin |
0.701 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32199 |
PF3D7_0937300 |
|
|
rifin PIR protein |
0.700 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32191 |
PF3D7_0800100 |
|
|
erythrocyte membrane protein 1, PfEMP1 |
0.699 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32156 |
PF3D7_0400100 |
|
|
erythrocyte membrane protein 1, PfEMP1 |
0.698 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32171 |
PF3D7_0500500 |
|
|
PIR protein rifin |
0.697 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32206 |
PF3D7_1040100 |
|
|
rifin |
0.697 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32188 |
PF3D7_0700800 |
|
|
Pfmc-2TM Maurer's cleft two transmembrane protein |
0.695 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32225 |
PF3D7_1301000 |
|
|
rifin, pseudogene |
0.694 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32181 |
PF3D7_0617600 |
|
|
PIR protein stevor |
0.694 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32215 |
PF3D7_1200300 |
|
|
PIR protein rifin |
0.689 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32153 |
PF3D7_0315200 |
|
|
circumsporozoite- and TRAP-related protein |
0.688 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32152 |
PF3D7_0304000 |
|
|
inner membrane complex protein 1a, putative |
0.688 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32202 |
PF3D7_1006100 |
|
|
CCR4-NOT transcription complex subunit 5, putative |
0.688 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32234 |
PF3D7_1400100 |
|
|
erythrocyte membrane protein 1 (PfEMP1), truncated, pseudogene |
0.684 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32245 |
PF3D7_1369800 |
|
|
tRNA Arginine |
0.684 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32182 |
PF3D7_0617700 |
|
|
rifin PIR protein |
0.683 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32162 |
PF3D7_0402800 |
|
|
erythrocyte membrane protein 1 (PfEMP1), pseudogene |
0.680 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32233 |
PF3D7_1367800 |
|
|
secreted ookinete protein, putative |
0.678 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32170 |
PF3D7_0426000 |
|
|
erythrocyte membrane protein 1, PfEMP1 |
0.676 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32248 |
PF3D7_0702800 |
|
|
tRNA Tyrosine |
0.676 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32161 |
PF3D7_0402700 |
|
|
rifin, pseudogene |
0.675 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32184 |
PF3D7_0631800 |
|
|
rifin |
0.668 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32159 |
PF3D7_0401000 |
|
|
rifin |
0.665 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32235 |
PF3D7_1400700 |
|
|
stevor PIR protein |
0.664 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32139 |
PF3D7_0100200 |
|
|
PIR protein rifin |
0.664 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32201 |
PF3D7_1000100 |
|
|
erythrocyte membrane protein 1, PfEMP1 |
0.660 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32210 |
PF3D7_1100800 |
|
|
Pfmc-2TM Maurer's cleft two transmembrane protein |
0.654 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32251 |
PF3D7_1369900 |
|
|
tRNA Tryptophan |
0.644 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32140 |
PF3D7_0100800 |
|
|
PIR protein rifin |
0.637 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32164 |
PF3D7_0421100 |
|
|
erythrocyte membrane protein 1, PfEMP1 |
0.636 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32222 |
PF3D7_1254500 |
|
|
rifin |
0.634 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32223 |
PF3D7_1300600 |
|
|
rifin PIR protein |
0.633 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32161 |
PF3D7_0402700 |
|
|
rifin, pseudogene |
0.632 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32195 |
PF3D7_0832500 |
|
|
PIR protein rifin |
0.626 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32250 |
PF3D7_0410100 |
|
|
tRNA Serine |
0.609 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32158 |
PF3D7_0400900 |
|
|
rifin |
0.592 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32179 |
PF3D7_0601700 |
|
|
Plasmodium exported protein (PHISTa), unknown function, pseudogene |
0.580 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32252 |
PF3D7_0403000 |
|
|
tRNA Asparagine |
0.575 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32247 |
PF3D7_0527800 |
|
|
tRNA Leucine |
0.570 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32155 |
PF3D7_0324500 |
|
|
rifin |
0.564 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32238 |
PF3D7_1442600 |
|
|
sporozoite-specific transmembrane protein S6 TRAP-like protein |
0.545 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32249 |
PF3D7_0312700 |
|
|
tRNA Isoleucine |
0.514 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32253 |
PF3D7_1370100 |
|
|
tRNA Cysteine |
0.481 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|