Alternative splicing events confirmed by RNA-Seq
Otto TD, Wilinski D, Assefa S, Keane TM, Sarry LR, Böhme U, Lemieux J, Barrell B, Pain A, Berriman M, Newbold C, Llinás M. New insights into the blood-stage transcriptome of Plasmodium falciparum using RNA-Seq. Mol Microbiol. 2010 76(1):12-24. PMID: 20141604
Chr. Alternative splicing events PfID Annotation EC Transcript
38245 1 Exon skipping PF3D7_0107000
centrin-1
38246 1 Exon skipping PF3D7_0109900
38247 2 3′ and 5′ alternative PF3D7_0202900
palmitoyltransferase, putative 2.3.1.-
38248 2 3′ and 5′ alternative PF3D7_0205700 RNA-binding protein, putative
38250 2 3′ and 5′ alternative PF3D7_0209100
patatin-like phospholipase 1; PNPLA1 3.1.1.4
38251 2 3′ and 5′ alternative PF3D7_0210100 60S ribosomal protein L37ae, putative
38249 2 Alternative stop PF3D7_0206900
merozoite surface protein 5
38252 3 3′ and 5′ alternative PF3D7_0304400 60S ribosomal protein L44
38253 3 3′ and 5′ alternative PF3D7_0310600 SAC3/GNAP family-related protein, putative
38254 3 3′ and 5′ alternative PF3D7_0313700 conserved Plasmodium protein, unknown function
38255 3 3′ and 5′ alternative PF3D7_0314100 vesicle transport v-SNARE protein, putative
38256 4 3′ and 5′ alternative PF3D7_0401600 PIR protein rifin
38257 4 3′ and 5′ alternative PF3D7_0414900
armadillo-domain containing rhoptry protein
38258 4 3′ and 5′ alternative PF3D7_0417500 memo-like protein
38259 5 3′ and 5′ alternative PF3D7_0526200 ADP-ribosylation factor GTPase-activating protein 2
38260 5 Exon skipping PF3D7_0527600 conserved Plasmodium protein, unknown function
38261 5 Intron creation PF3D7_0529400 conserved Plasmodium protein, unknown function
38265 6 3′ and 5′ alternative PF3D7_0628300
choline/ethanolaminephosphotransferase, putative 2.7.8.1
38262 6 Intron creation PF3D7_0606100 RNA-binding protein, putative
38263 6 3′ and 5′ alternative PF3D7_0613000 conserved Plasmodium protein, unknown function
38263 6 Exon Skipping PF3D7_0613000 conserved Plasmodium protein, unknown function
38263 6 3′ and 5′ alternative PF3D7_0613000 conserved Plasmodium protein, unknown function
38263 6 3′ and 5′ alternative PF3D7_0613000 conserved Plasmodium protein, unknown function
38264 6 3′ and 5′ alternative PF3D7_0619000 fpl domain-containing protein, putative
38272 7 Alternative stop PF3D7_0832200
Plasmodium exported protein (PHISTa-like), unknown function
38271 7 3′ and 5′ alternative PF3D7_0831600
cytoadherence linked asexual protein 8
38266 7 3′ and 5′ alternative PF3D7_0701900 Plasmodium exported protein, unknown function
38267 7 3′ and 5′ alternative PF3D7_0729600 cox assembly mitochondrial protein, putative
38270 8 3′ and 5′ alternative PF3D7_0810900 conserved Plasmodium protein, unknown function
38268 8 3′ and 5′ alternative PF3D7_0803600 conserved Plasmodium protein, unknown function
38269 8 3′ and 5′ alternative PF3D7_0805000 alpha/beta hydrolase, putative
38273 9 3′ and 5′ alternative PF3D7_0902600 serine/threonine protein kinase, FIKK family 2.7.11.1
38275 9 3′ and 5′ alternative PF3D7_0905700
autophagy-related protein 3, putative
38275 9 Exon skipping PF3D7_0905700
autophagy-related protein 3, putative
38274 9 Alternative stop PF3D7_0903600 conserved Plasmodium protein, unknown function
38276 9 Exon skipping PF3D7_0911500 conserved Plasmodium protein, unknown function
38277 9 3′ and 5′ alternative PF3D7_0918200 50S ribosomal protein L3, apicoplast, putative
38278 9 Exon skipping PF3D7_0921000 ubiquitin-conjugating enzyme E2, putative 2.3.2.2
38279 9 3′ and 5′ alternative PF3D7_0928000 COX6b cytochrome c oxidase subunit 6B, putative 1.9.3.1
38280 9 3′ and 5′ alternative PF3D7_0930600 peptidyl-prolyl cis-trans isomerase 5.2.1.8
38281 9 Alternative start PF3D7_0936000
ring-exported protein 2
38282 10 3′ and 5′ alternative PF3D7_1002400 transformer-2 protein homolog beta, putative
38283 10 3′ and 5′ alternative PF3D7_1015200
cysteine--tRNA ligase, putative 6.1.1.16
38283 10 3′ and 5′ alternative PF3D7_1015200
cysteine--tRNA ligase, putative 6.1.1.16
38284 10 Exon skipping PF3D7_1015600
heat shock protein 60
38285 10 3′ and 5′ alternative PF3D7_1038000 antigen UB05
38286 11 3′ and 5′ alternative PF3D7_1104700 DNA-directed RNA polymerase III subunit RPC8, putative 2.7.7.6
38287 11 3′ and 5′ alternative PF3D7_1114100
rhomboid protease ROM1 3.4.21.105
38288 11 3′ and 5′ alternative PF3D7_1116200
pyridoxine biosynthesis protein PDX2 1.4.3.5
38289 11 3′ and 5′ alternative PF3D7_1119500 AP-4 complex subunit mu, putative
38290 11 3′ and 5′ alternative PF3D7_1126300 DnaJ protein, putative
38291 11 Alternative stop PF3D7_1136500
casein kinase 1 2.7.11.1
38292 12 3′ and 5′ alternative PF3D7_1203900
ubiquitin-conjugating enzyme E2 2.3.2.23
38293 12 3′ and 5′ alternative PF3D7_1212300 WD repeat-containing protein, putative
38294 12 3′ and 5′ alternative PF3D7_1212600 snd2 domain-containing protein, putative
38295 12 Exon skipping PF3D7_1217100 meiotic recombination protein SPO11, putative 5.99.1.3
38296 12 3′ and 5′ alternative PF3D7_1221100 conserved Plasmodium protein, unknown function
38297 12 Intron creation PF3D7_1234200 helicase, putative, pseudogene
38298 13 3′ and 5′ alternative PF3D7_1313800 conserved Plasmodium membrane protein, unknown function
38299 13 3′ and 5′ alternative PF3D7_1315600
CDP-diacylglycerol--inositol 3-phosphatidyltransferase phosphatidylinositol synthase 2.7.8.11
38299 13 Exon skipping PF3D7_1315600
CDP-diacylglycerol--inositol 3-phosphatidyltransferase phosphatidylinositol synthase 2.7.8.11
38300 13 3′ and 5′ alternative PF3D7_1316000
protein kinase, putative 2.7.11.1
38301 13 3′ and 5′ alternative PF3D7_1321500
3',5'-cyclic nucleotide phosphodiesterase beta 3.1.4.17
38302 13 Intron creation PF3D7_1326400 translation initiation factor eIF-2B subunit gamma, putative
38302 13 Intron creation PF3D7_1326400 translation initiation factor eIF-2B subunit gamma, putative
38303 13 3′ and 5′ alternative PF3D7_1330400 ER lumen protein retaining receptor 1, putative
38304 13 3′ and 5′ alternative PF3D7_1351100 conserved protein, unknown function
38305 13 Intron creation PF3D7_1352600 protein kinase, putative
38305 13 Intron creation PF3D7_1352600 protein kinase, putative
38306 13 Exon skipping PF3D7_1356700 DnaJ protein, putative
38306 13 Exon skipping PF3D7_1356700 DnaJ protein, putative
38307 13 3′ and 5′ alternative PF3D7_1360900 RNA-binding protein, putative
38308 13 Exon skipping PF3D7_1361500 ph domain-containing protein, putative
38309 14 3′ and 5′ alternative PF3D7_1409200 conserved Plasmodium protein, unknown function
38310 14 Exon skipping PF3D7_1411000 conserved Plasmodium protein, unknown function
38311 14 3′ and 5′ alternative PF3D7_1411100 conserved Plasmodium membrane protein, unknown function
38312 14 Exon skipping PF3D7_1412900 ubiquitin-conjugating enzyme E2, putative 6.3.2.19
38313 14 3′ and 5′ alternative PF3D7_1427400 conserved Plasmodium membrane protein, unknown function
38314 14 Exon skipping PF3D7_1435700 ataxin-2 like protein, putative
38315 14 3′ and 5′ alternative PF3D7_1449300 transcription factor IIIb subunit, putative
38316 14 3′ and 5′ alternative PF3D7_1455200 methyltransferase aamt 2.1.1.201
38317 14 3′ and 5′ alternative PF3D7_1460900 ribosomal protein S10, apicoplast, putative
38318 14 3′ and 5′ alternative PF3D7_1463900
rhoptry neck protein 11, putative
38319 14 3′ and 5′ alternative PF3D7_1468500 derlin-1
Online articles related to Alternative splicing events confirmed by RNA-Seq retrieved from PubMed

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