Alternative splicing events confirmed by RNA-Seq
Otto TD, Wilinski D, Assefa S, Keane TM, Sarry LR, Böhme U, Lemieux J, Barrell B, Pain A, Berriman M, Newbold C, Llinás M. New insights into the blood-stage transcriptome of Plasmodium falciparum using RNA-Seq. Mol Microbiol. 2010 76(1):12-24. PMID: 20141604
Chr. Alternative splicing events PfID Annotation EC Transcript
1 Exon skipping PF3D7_0107000
centrin-1
1 Exon skipping PF3D7_0109900
2 3′ and 5′ alternative PF3D7_0202900
palmitoyltransferase, putative 2.3.1.-
2 3′ and 5′ alternative PF3D7_0205700 RNA-binding protein, putative
2 3′ and 5′ alternative PF3D7_0209100
patatin-like phospholipase 1; PNPLA1 3.1.1.4
2 3′ and 5′ alternative PF3D7_0210100 60S ribosomal protein L37ae, putative
2 Alternative stop PF3D7_0206900
merozoite surface protein 5
3 3′ and 5′ alternative PF3D7_0304400 60S ribosomal protein L44
3 3′ and 5′ alternative PF3D7_0310600 SAC3/GNAP family-related protein, putative
3 3′ and 5′ alternative PF3D7_0313700 conserved Plasmodium protein, unknown function
3 3′ and 5′ alternative PF3D7_0314100
vesicle transport v-SNARE protein, putative
4 3′ and 5′ alternative PF3D7_0401600 PIR protein rifin
4 3′ and 5′ alternative PF3D7_0414900
armadillo-domain containing rhoptry protein
4 3′ and 5′ alternative PF3D7_0417500 memo-like protein
5 3′ and 5′ alternative PF3D7_0526200 ADP-ribosylation factor GTPase-activating protein 2
5 Exon skipping PF3D7_0527600 conserved Plasmodium protein, unknown function
5 Intron creation PF3D7_0529400 conserved Plasmodium protein, unknown function
6 3′ and 5′ alternative PF3D7_0628300
choline/ethanolaminephosphotransferase, putative 2.7.8.1
6 Intron creation PF3D7_0606100 RNA-binding protein, putative
6 3′ and 5′ alternative PF3D7_0613000 conserved Plasmodium protein, unknown function
6 Exon Skipping PF3D7_0613000 conserved Plasmodium protein, unknown function
6 3′ and 5′ alternative PF3D7_0613000 conserved Plasmodium protein, unknown function
6 3′ and 5′ alternative PF3D7_0613000 conserved Plasmodium protein, unknown function
6 3′ and 5′ alternative PF3D7_0619000 fpl domain-containing protein, putative
7 Alternative stop PF3D7_0832200
Plasmodium exported protein (PHISTa-like), unknown function
7 3′ and 5′ alternative PF3D7_0831600
cytoadherence linked asexual protein 8
7 3′ and 5′ alternative PF3D7_0701900 Plasmodium exported protein, unknown function
7 3′ and 5′ alternative PF3D7_0729600 cox assembly mitochondrial protein, putative
8 3′ and 5′ alternative PF3D7_0810900 conserved Plasmodium protein, unknown function
8 3′ and 5′ alternative PF3D7_0803600 conserved Plasmodium protein, unknown function
8 3′ and 5′ alternative PF3D7_0805000 alpha/beta hydrolase, putative
9 3′ and 5′ alternative PF3D7_0902600 serine/threonine protein kinase, FIKK family 2.7.11.1
9 3′ and 5′ alternative PF3D7_0905700
autophagy-related protein 3, putative
9 Exon skipping PF3D7_0905700
autophagy-related protein 3, putative
9 Alternative stop PF3D7_0903600 conserved Plasmodium protein, unknown function
9 Exon skipping PF3D7_0911500 conserved Plasmodium protein, unknown function
9 3′ and 5′ alternative PF3D7_0918200 50S ribosomal protein L3, apicoplast, putative
9 Exon skipping PF3D7_0921000 ubiquitin-conjugating enzyme E2, putative 2.3.2.2
9 3′ and 5′ alternative PF3D7_0928000 COX6b cytochrome c oxidase subunit 6B, putative 1.9.3.1
9 3′ and 5′ alternative PF3D7_0930600 peptidyl-prolyl cis-trans isomerase 5.2.1.8
9 Alternative start PF3D7_0936000
ring-exported protein 2
10 3′ and 5′ alternative PF3D7_1002400 transformer-2 protein homolog beta, putative
10 3′ and 5′ alternative PF3D7_1015200
cysteine--tRNA ligase, putative 6.1.1.16
10 3′ and 5′ alternative PF3D7_1015200
cysteine--tRNA ligase, putative 6.1.1.16
10 Exon skipping PF3D7_1015600
heat shock protein 60
10 3′ and 5′ alternative PF3D7_1038000 antigen UB05
11 3′ and 5′ alternative PF3D7_1104700 DNA-directed RNA polymerase III subunit RPC8, putative 2.7.7.6
11 3′ and 5′ alternative PF3D7_1114100
rhomboid protease ROM1 3.4.21.105
11 3′ and 5′ alternative PF3D7_1116200
pyridoxine biosynthesis protein PDX2 1.4.3.5
11 3′ and 5′ alternative PF3D7_1119500 AP-4 complex subunit mu, putative
11 3′ and 5′ alternative PF3D7_1126300 DnaJ protein, putative
11 Alternative stop PF3D7_1136500
casein kinase 1 2.7.11.1
12 3′ and 5′ alternative PF3D7_1203900
ubiquitin-conjugating enzyme E2 2.3.2.23
12 3′ and 5′ alternative PF3D7_1212300 WD repeat-containing protein, putative
12 3′ and 5′ alternative PF3D7_1212600 snd2 domain-containing protein, putative
12 Exon skipping PF3D7_1217100 meiotic recombination protein SPO11, putative 5.99.1.3
12 3′ and 5′ alternative PF3D7_1221100 conserved Plasmodium protein, unknown function
12 Intron creation PF3D7_1234200 helicase, putative, pseudogene
13 3′ and 5′ alternative PF3D7_1313800 conserved Plasmodium membrane protein, unknown function
13 3′ and 5′ alternative PF3D7_1315600
CDP-diacylglycerol--inositol 3-phosphatidyltransferase phosphatidylinositol synthase 2.7.8.11
13 Exon skipping PF3D7_1315600
CDP-diacylglycerol--inositol 3-phosphatidyltransferase phosphatidylinositol synthase 2.7.8.11
13 3′ and 5′ alternative PF3D7_1316000
protein kinase, putative 2.7.11.1
13 3′ and 5′ alternative PF3D7_1321500
3',5'-cyclic nucleotide phosphodiesterase beta 3.1.4.17
13 Intron creation PF3D7_1326400 translation initiation factor eIF-2B subunit gamma, putative
13 Intron creation PF3D7_1326400 translation initiation factor eIF-2B subunit gamma, putative
13 3′ and 5′ alternative PF3D7_1330400 ER lumen protein retaining receptor 1, putative
13 3′ and 5′ alternative PF3D7_1351100 conserved protein, unknown function
13 Intron creation PF3D7_1352600 protein kinase, putative
13 Intron creation PF3D7_1352600 protein kinase, putative
13 Exon skipping PF3D7_1356700 DnaJ protein, putative
13 Exon skipping PF3D7_1356700 DnaJ protein, putative
13 3′ and 5′ alternative PF3D7_1360900 RNA-binding protein, putative
13 Exon skipping PF3D7_1361500 ph domain-containing protein, putative
14 3′ and 5′ alternative PF3D7_1409200 conserved Plasmodium protein, unknown function
14 Exon skipping PF3D7_1411000 conserved Plasmodium protein, unknown function
14 3′ and 5′ alternative PF3D7_1411100 conserved Plasmodium membrane protein, unknown function
14 Exon skipping PF3D7_1412900 ubiquitin-conjugating enzyme E2, putative 6.3.2.19
14 3′ and 5′ alternative PF3D7_1427400 conserved Plasmodium membrane protein, unknown function
14 Exon skipping PF3D7_1435700 ataxin-2 like protein, putative
14 3′ and 5′ alternative PF3D7_1449300 transcription factor IIIb subunit, putative
14 3′ and 5′ alternative PF3D7_1455200 methyltransferase aamt 2.1.1.201
14 3′ and 5′ alternative PF3D7_1460900 ribosomal protein S10, apicoplast, putative
14 3′ and 5′ alternative PF3D7_1463900
rhoptry neck protein 11, putative
14 3′ and 5′ alternative PF3D7_1468500 derlin-1
Online articles related to Alternative splicing events confirmed by RNA-Seq retrieved from PubMed

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