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RNA binding proteins |
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Reddy BP, Shrestha S, Hart KJ, Liang X, Kemirembe K, Cui L, Lindner SE. A bioinformatic survey of RNA-binding proteins in Plasmodium. BMC Genomics. 2015 Nov 2;16(1):890. PMID: 26525978. |
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RNA-binding domain |
PfID |
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Annotation |
EC |
Transcript |
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34238 |
RRM - RNA-Recognition Motif |
PF3D7_0414500 |
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RNA-binding protein, putative |
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34416 |
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PF3D7_1468800 |
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splicing factor U2AF large subunit, putative |
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34335 |
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PF3D7_1119300 |
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splicing factor U2AF small subunit, putative |
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34306 |
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PF3D7_0920900 |
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U4/U6 snRNA-associated-splicing factor, putative |
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34311 |
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PF3D7_0935000 |
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U2 small nuclear ribonucleoprotein B'', putative |
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34386 |
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PF3D7_1402700 |
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U2 snRNP-associated SURP motif-containing protein, putative |
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34385 |
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PF3D7_1367100 |
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U1 small nuclear ribonucleoprotein 70 kda homolog, putative |
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34363 |
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PF3D7_1306900 |
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U1 small nuclear ribonucleoprotein A, putative |
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34350 |
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PF3D7_1224300 |
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polyadenylate-binding protein 1, putative |
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34280 |
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PF3D7_0629400 |
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polyadenylate-binding protein 3, putative |
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34307 |
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PF3D7_0923900 |
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polyadenylate-binding protein 2, putative |
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34383 |
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PF3D7_1360900 |
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RNA-binding protein, putative |
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34399 |
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PF3D7_1438800 |
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mRNA-binding protein PUF3 |
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34270 |
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PF3D7_0606500 |
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polypyrimidine tract binding protein, putative |
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34355 |
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PF3D7_1236100 |
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clustered-asparagine-rich protein |
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34389 |
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PF3D7_1409800 |
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CUGBP Elav-like family member 2 |
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34298 |
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PF3D7_0823200 |
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RNA-binding protein, putative |
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34380 |
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PF3D7_1359400 |
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Cugbp Elav-like family member 1 |
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34408 |
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PF3D7_1454000 |
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RNA-binding protein, putative |
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34252 |
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PF3D7_0517300 |
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serine/arginine-rich splicing factor 1 |
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34313 |
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PF3D7_1004400 |
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RNA-binding protein, putative |
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34336 |
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PF3D7_1119800 |
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alternative splicing factor ASF-1, putative |
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34245 |
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PF3D7_0503300 |
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serine/arginine-rich splicing factor 12 |
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34316 |
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PF3D7_1006800 |
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G-strand-binding protein 2 |
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34312 |
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PF3D7_1002400 |
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transformer-2 protein homolog beta, putative |
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34324 |
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PF3D7_1022400 |
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serine/arginine-rich splicing factor 4 |
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34304 |
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PF3D7_0916700 |
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RNA-binding protein musashi, putative |
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34348 |
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PF3D7_1217200 |
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multiple rna-binding domain-containing protein 1 |
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34351 |
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PF3D7_1224900 |
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splicing factor 3B subunit 6, putative |
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34395 |
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PF3D7_1420000 |
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splicing factor 3B subunit 4, putative |
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34371 |
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PF3D7_1321700 |
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splicing factor 1 |
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34360 |
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PF3D7_1248200 |
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RNA-binding protein, putative |
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34321 |
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PF3D7_1020000 |
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RNA-binding protein 34, putative |
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34250 |
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PF3D7_0515000 |
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pre-mRNA-splicing factor CWC2, putative |
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34287 |
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PF3D7_0728900 |
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RNA-binding protein, putative |
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34230 |
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PF3D7_0319500 |
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RNA-binding protein, putative |
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34333 |
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PF3D7_1112400 |
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nucleic acid binding protein, putative |
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34369 |
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PF3D7_1317400 |
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zinc finger protein, putative |
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34239 |
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PF3D7_0415500 |
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nuclear cap-binding protein subunit 2, putative |
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34272 |
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PF3D7_0615700 |
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tho complex subunit 4, putative |
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34294 |
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PF3D7_0815600 |
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eukaryotic translation initiation factor 3 subunit G, putative |
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34310 |
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PF3D7_0933000 |
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cstf domain-containing protein, putative |
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34325 |
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PF3D7_1024200 |
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RNA-binding protein, putative |
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34346 |
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PF3D7_1207500 |
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RNA-binding protein, putative |
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34370 |
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PF3D7_1320900 |
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RNA-binding protein, putative |
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34388 |
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PF3D7_1406000 |
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RNA-binding protein 8a, putative |
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34253 |
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PF3D7_0517700 |
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eukaryotic translation initiation factor 3 subunit B, putative |
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34354 |
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PF3D7_1235300 |
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CCR4-NOT transcription complex subunit 4, putative |
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34269 |
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PF3D7_0606100 |
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RNA-binding protein, putative |
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34330 |
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PF3D7_1107100 |
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nucleic acid binding protein, putative |
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34339 |
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PF3D7_1131000 |
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RNA-binding protein s1, putative |
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34382 |
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PF3D7_1360100 |
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RNA-binding protein, putative |
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34291 |
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PF3D7_0812500 |
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RNA-binding protein, putative |
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34234 |
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PF3D7_0405400 |
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pre-mRNA-processing-splicing factor 8, putative |
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34276 |
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PF3D7_0623400 |
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mei2-like RNA-binding protein, putative, mei2 |
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34365 |
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PF3D7_1310700 |
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PhIL1-interacting protein PhIP |
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34368 |
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PF3D7_1317300 |
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RNA-binding protein, putative |
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34271 |
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PF3D7_0610200 |
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RNA-binding protein, putative |
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34372 |
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PF3D7_1326300 |
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RNA-binding protein, putative |
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34284 |
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PF3D7_0716000 |
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RNA-binding protein, putative |
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34332 |
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PF3D7_1110400 |
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RNA-binding protein, putative |
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34266 |
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PF3D7_0603100 |
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RNA-binding protein, putative |
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34387 |
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PF3D7_1405900 |
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RNA-binding protein, putative |
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34286 |
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PF3D7_0723900 |
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RNA-binding protein, putative, RBM15 |
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34309 |
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PF3D7_0929200 |
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RNA-binding protein, putative |
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34373 |
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PF3D7_1330800 |
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RNA-binding protein, putative |
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34240 |
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PF3D7_0416000 |
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RNA-binding protein, putative |
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34296 |
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PF3D7_0820100 |
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RNA-binding protein, putative |
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34340 |
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PF3D7_1132100 |
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RNA-binding protein, putative |
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34219 |
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PF3D7_0205700 |
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RNA-binding protein, putative |
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34323 |
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PF3D7_1022000 |
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RNA-binding protein uis12, putative |
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34403 |
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PF3D7_1445600 |
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RNA-binding protein, putative |
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34342 |
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PF3D7_1139100 |
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RNA-binding protein, putative |
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34377 |
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PF3D7_1353400 |
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Ran-binding protein, putative |
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34338 |
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PF3D7_0617300 |
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RNA-binding protein, putative |
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34358 |
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PF3D7_1135500 |
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RNA-binding protein, putative |
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34254 |
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PF3D7_1126800 |
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alternative splicing factor sr-mg, putative |
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34260 |
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PF3D7_1244400 |
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RNA-binding protein, putative |
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34267 |
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PF3D7_0518100 |
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protein amr2 |
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34279 |
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PF3D7_0526000 |
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RAP protein, putative |
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34283 |
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PF3D7_0604800 |
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RAP protein, putative |
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34326 |
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PF3D7_0628900 |
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RAP protein, putative |
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34337 |
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PF3D7_0707800 |
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RAP protein, putative |
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34352 |
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PF3D7_1024600 |
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RAP protein, putative |
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34378 |
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PF3D7_1123600 |
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RAP protein, putative |
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34407 |
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PF3D7_1226500 |
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heptatricopeptide repeat and rap domain-containing protein, putative |
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34419 |
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PF3D7_1355200 |
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RAP protein, putative |
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34334 |
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PF3D7_1453600 |
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RAP protein, putative |
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|
|
34278 |
|
PF3D7_1470600 |
 |
|
RAP21 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34223 |
|
PF3D7_1114400 |
|
|
rap protein, putative |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34285 |
DEXD Helicase |
PF3D7_0623700 |
|
|
ATP-dependent RNA helicase suv3, putative |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34393 |
|
PF3D7_0218400 |
|
|
ATPdependent RNA helicase ddx47, putative |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34392 |
|
PF3D7_0721300 |
 |
|
ATP-dependent DNA helicase DDX31 |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34281 |
|
PF3D7_1419100 |
 |
|
ATP-dependent RNA helicase ddx55 |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34364 |
|
PF3D7_1418900 |
|
|
ATP-dependent RNA helicase DBP4, putative |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34374 |
|
PF3D7_0630900 |
|
|
ATP-dependent RNA helicase HAS1 |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34299 |
|
PF3D7_1307300 |
|
|
ATP-dependent RNA helicase dbp6 |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34361 |
|
PF3D7_1332700 |
|
|
ATP-dependent RNA helicase DBP8, putative |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34244 |
|
PF3D7_0827000 |
|
|
ATP-dependent RNA helicase DBP10, putative |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34322 |
|
PF3D7_1251500 |
|
|
ATP-dependent RNA helicase drs1, putative |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34261 |
|
PF3D7_0422700 |
|
|
eukaryotic initiation factor 4A-III, putative |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34362 |
|
PF3D7_1021500 |
|
|
ATP-dependent RNA helicase ROK1, putative |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34404 |
|
PF3D7_0527900 |
|
|
ATP-dependent rna helicase ddx41, putative |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34265 |
|
PF3D7_1302700 |
|
|
ATP-dependent RNA helicase dhr1, putative |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34247 |
|
PF3D7_1445900 |
 |
|
ATP-dependent RNA helicase ddx17 |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34231 |
|
PF3D7_0602100 |
|
|
ATP-dependent RNA helicase, mtr4 |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34288 |
|
PF3D7_0504400 |
 |
|
ATP-dependent helicase, putative |
3.6.1.3 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34289 |
|
PF3D7_0320800 |
 |
|
ATP-dependent RNA helicase DDX6 |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34409 |
|
PF3D7_0807100 |
 |
 |
parasite specific helicase 3 |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34415 |
|
PF3D7_0810600 |
|
|
ATP-dependent RNA helicase dbp1, putative |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34232 |
|
PF3D7_1459000 |
|
 |
ATP-dependent RNA helicase DBP5 |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34297 |
|
PF3D7_1468700 |
 |
 |
eukaryotic initiation factor 4A helicase 45 |
3.6.4.12 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34303 |
|
PF3D7_0321600 |
|
|
ATP-dependent RNA helicase ddx42, putative |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34305 |
|
PF3D7_0821300 |
|
|
ATP-dependent RNA helicase dhx36, putative |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34221 |
|
PF3D7_0909900 |
|
|
helicase ski2w |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34353 |
|
PF3D7_0917600 |
|
 |
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43, putative |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34248 |
|
PF3D7_0209800 |
|
 |
ATP-dependent RNA helicase UAP56 |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34384 |
|
PF3D7_1231600 |
|
|
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP2, putative |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34328 |
|
PF3D7_0508700 |
|
|
pre-mRNA-processing ATP-dependent RNA helicase PRP5, putative |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34255 |
|
PF3D7_1364300 |
 |
 |
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34400 |
|
PF3D7_1030100 |
|
 |
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22, putative |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34243 |
|
PF3D7_0518500 |
|
 |
ATP-dependent RNA helicase DDX23, putative |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34282 |
|
PF3D7_1439100 |
|
|
DEAD/DEAH box helicase, putative |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34314 |
|
PF3D7_0422500 |
|
|
pre-mRNA-splicing helicase BRR2, putative |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34246 |
|
PF3D7_0703500 |
|
 |
erythrocyte membrane-associated antigen |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34300 |
|
PF3D7_1005500 |
|
|
regulator of nonsense transcripts 1, putative |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34329 |
|
PF3D7_0504200 |
|
|
ATP-dependent RNA helicase ddx27, putative |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34356 |
|
PF3D7_0903400 |
|
|
ATP-dependent RNA helicase ddx60, putative |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34257 |
|
PF3D7_1031500 |
 |
|
ATP-dependent DNA helicase ddx3x |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34226 |
|
PF3D7_1241800 |
|
|
ATP-dependent RNA helicase DBP9, putative |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34233 |
|
PF3D7_0521700 |
|
|
ATP-dependent RNA helicase ddx1, putative |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34343 |
|
PF3D7_0310500 |
|
|
DEAD box helicase, putative |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34402 |
|
PF3D7_0405000 |
|
|
ATP-dependent RNA helicase ddx51, putative |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34237 |
|
PF3D7_1202000 |
 |
 |
ATP-dependent DNA/RNA helicase PSH2 |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34218 |
|
PF3D7_1445200 |
|
|
ATP-dependent RNA helicase MAK5, putative |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34366 |
|
PF3D7_0411400 |
|
|
DEAD box ATP-dependent RNA helicase, putative |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34268 |
|
PF3D7_0103600 |
 |
|
ATP-dependent DNA/RNA helicase psh1 |
3.6.4.13 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34390 |
|
PF3D7_1313400 |
|
|
DEAD box helicase, putative |
3.6.1.3 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34277 |
K homology |
PF3D7_0605100 |
|
|
KH domain-containing protein, putative |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34412 |
|
PF3D7_1415300 |
|
|
RNA-binding protein Nova-1, putative |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34220 |
|
PF3D7_0623600 |
|
|
splicing factor-like protein, putative |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34418 |
|
PF3D7_1465900 |
|
|
40S ribosomal protein S3 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34398 |
|
PF3D7_0208200 |
|
|
KRR1 small subunit processome component, putative |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34224 |
|
PF3D7_1469300 |
|
|
pre-rRNA-processing protein pno1, putative |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34249 |
|
PF3D7_1435800 |
|
|
GTPase Era, putative |
3.6.5.2 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34319 |
|
PF3D7_0302800 |
|
|
RNA-binding protein, putative |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34381 |
|
PF3D7_0510100 |
|
|
kh domain-containing protein, putative |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34256 |
|
PF3D7_1011800 |
|
|
PRE-binding protein |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34241 |
PF3D7_1359600 |
|
|
conserved Plasmodium protein, unknown function |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34274 |
Fem-3 binding factor PUF |
PF3D7_0518700 |
|
|
mRNA-binding protein PUF1 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34293 |
|
PF3D7_0417100 |
|
|
mRNA-binding protein PUF2 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34375 |
PF3D7_0621300 |
 |
|
mRNA-binding protein puf3 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34315 |
Acetylation Lowers Binding Affinity Alba |
PF3D7_0814200 |
 |
 |
DNA/RNA-binding protein Alba 1 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34376 |
|
PF3D7_1346300 |
 |
|
DNA/RNA-binding protein Alba 2 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34222 |
|
PF3D7_1006200 |
 |
 |
DNA/RNA-binding protein Alba 3 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34344 |
|
PF3D7_1347500 |
 |
 |
DNA/RNA-binding protein Alba 4 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34242 |
|
PF3D7_0216200 |
|
|
alba domain-containing protein, putative |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34401 |
|
PF3D7_1202800 |
|
|
conserved Plasmodium protein, unknown function |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34317 |
|
PF3D7_0418700 |
|
|
RNA-binding protein NOB1, putative |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34259 |
|
PF3D7_1443800 |
 |
|
pre-mrna-splicing factor cwc24 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34301 |
|
PF3D7_1008600 |
|
|
zinc finger (ccch type) protein, putative |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34396 |
|
PF3D7_0525000 |
|
|
zinc finger protein, putative |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34379 |
|
PF3D7_0906600 |
|
|
zinc finger protein, putative |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34320 |
|
PF3D7_1425600 |
|
|
zinc finger protein, putative |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34347 |
|
PF3D7_1358600 |
|
|
zinc finger protein, putative |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
34367 |
|
PF3D7_1019300 |
|
|
zinc finger protein, putative |
|
 |