RNA binding proteins
Reddy BP, Shrestha S, Hart KJ, Liang X, Kemirembe K, Cui L, Lindner SE. A bioinformatic survey of RNA-binding proteins in Plasmodium. BMC Genomics. 2015 Nov 2;16(1):890. PMID: 26525978.
RNA-binding domain PfID Annotation EC Transcript
RRM - RNA-Recognition Motif PF3D7_0414500 RNA-binding protein, putative
PF3D7_1468800 splicing factor U2AF large subunit, putative
PF3D7_1119300 splicing factor U2AF small subunit, putative
PF3D7_0920900 U4/U6 snRNA-associated-splicing factor, putative
PF3D7_0935000 U2 small nuclear ribonucleoprotein B'', putative
PF3D7_1402700 U2 snRNP-associated SURP motif-containing protein, putative
PF3D7_1367100 U1 small nuclear ribonucleoprotein 70 kda homolog, putative
PF3D7_1306900 U1 small nuclear ribonucleoprotein A, putative
PF3D7_1224300
polyadenylate-binding protein 1, putative
PF3D7_0629400 polyadenylate-binding protein 3, putative
PF3D7_0923900 polyadenylate-binding protein 2, putative
PF3D7_1360900 RNA-binding protein, putative
PF3D7_1438800 mRNA-binding protein PUF3
PF3D7_0606500 polypyrimidine tract binding protein, putative
PF3D7_1236100 clustered-asparagine-rich protein
PF3D7_1409800 CUGBP Elav-like family member 2
PF3D7_0823200 RNA-binding protein, putative
PF3D7_1359400
Cugbp Elav-like family member 1
PF3D7_1454000 RNA-binding protein, putative
PF3D7_0517300
serine/arginine-rich splicing factor 1
PF3D7_1004400 RNA-binding protein, putative
PF3D7_1119800
alternative splicing factor ASF-1, putative
PF3D7_0503300
serine/arginine-rich splicing factor 12
PF3D7_1006800
G-strand-binding protein 2
PF3D7_1002400 transformer-2 protein homolog beta, putative
PF3D7_1022400
serine/arginine-rich splicing factor 4
PF3D7_0916700 RNA-binding protein musashi, putative
PF3D7_1217200 multiple rna-binding domain-containing protein 1
PF3D7_1224900 splicing factor 3B subunit 6, putative
PF3D7_1420000 splicing factor 3B subunit 4, putative
PF3D7_1321700 splicing factor 1
PF3D7_1248200 RNA-binding protein, putative
PF3D7_1020000 RNA-binding protein 34, putative
PF3D7_0515000 pre-mRNA-splicing factor CWC2, putative
PF3D7_0728900 RNA-binding protein, putative
PF3D7_0319500 RNA-binding protein, putative
PF3D7_1112400 nucleic acid binding protein, putative
PF3D7_1317400 zinc finger protein, putative
PF3D7_0415500 nuclear cap-binding protein subunit 2, putative
PF3D7_0615700 tho complex subunit 4, putative
PF3D7_0815600 eukaryotic translation initiation factor 3 subunit G, putative
PF3D7_0933000 cstf domain-containing protein, putative
PF3D7_1024200 RNA-binding protein, putative
PF3D7_1207500 RNA-binding protein, putative
PF3D7_1320900 RNA-binding protein, putative
PF3D7_1406000 RNA-binding protein 8a, putative
PF3D7_0517700 eukaryotic translation initiation factor 3 subunit B, putative
PF3D7_1235300 CCR4-NOT transcription complex subunit 4, putative
PF3D7_0606100 RNA-binding protein, putative
PF3D7_1107100 nucleic acid binding protein, putative
PF3D7_1131000 RNA-binding protein s1, putative
PF3D7_1360100
RNA-binding protein, putative
PF3D7_0812500 RNA-binding protein, putative
PF3D7_0405400 pre-mRNA-processing-splicing factor 8, putative
PF3D7_0623400 mei2-like RNA-binding protein, putative, mei2
PF3D7_1310700
PhIL1-interacting protein PhIP
PF3D7_1317300 RNA-binding protein, putative
PF3D7_0610200 RNA-binding protein, putative
PF3D7_1326300 RNA-binding protein, putative
PF3D7_0716000 RNA-binding protein, putative
PF3D7_1110400 RNA-binding protein, putative
PF3D7_0603100 RNA-binding protein, putative
PF3D7_1405900 RNA-binding protein, putative
PF3D7_0723900 RNA-binding protein, putative, RBM15
PF3D7_0929200 RNA-binding protein, putative
PF3D7_1330800 RNA-binding protein, putative
PF3D7_0416000 RNA-binding protein, putative
PF3D7_0820100 RNA-binding protein, putative
PF3D7_1132100 RNA-binding protein, putative
PF3D7_0205700 RNA-binding protein, putative
PF3D7_1022000 RNA-binding protein uis12, putative
PF3D7_1445600 RNA-binding protein, putative
PF3D7_1139100 RNA-binding protein, putative
PF3D7_1353400 Ran-binding protein, putative
PF3D7_0617300 RNA-binding protein, putative
PF3D7_1135500 RNA-binding protein, putative
PF3D7_1126800 alternative splicing factor sr-mg, putative
PF3D7_1244400 RNA-binding protein, putative
PF3D7_0518100
protein amr2
PF3D7_0526000 RAP protein, putative
PF3D7_0604800 RAP protein, putative
PF3D7_0628900 RAP protein, putative
PF3D7_0707800 RAP protein, putative
PF3D7_1024600 RAP protein, putative
PF3D7_1123600 RAP protein, putative
PF3D7_1226500 heptatricopeptide repeat and rap domain-containing protein, putative
PF3D7_1355200 RAP protein, putative
PF3D7_1453600 RAP protein, putative
PF3D7_1470600
RAP21
PF3D7_1114400 rap protein, putative
DEXD Helicase PF3D7_0623700 ATP-dependent RNA helicase suv3, putative 3.6.4.13
PF3D7_0218400 ATPdependent RNA helicase ddx47, putative 3.6.4.13
PF3D7_0721300
ATP-dependent DNA helicase DDX31 3.6.4.13
PF3D7_1419100
ATP-dependent RNA helicase ddx55 3.6.4.13
PF3D7_1418900 ATP-dependent RNA helicase DBP4, putative 3.6.4.13
PF3D7_0630900 ATP-dependent RNA helicase HAS1 3.6.4.13
PF3D7_1307300 ATP-dependent RNA helicase dbp6 3.6.4.13
PF3D7_1332700 ATP-dependent RNA helicase DBP8, putative 3.6.4.13
PF3D7_0827000 ATP-dependent RNA helicase DBP10, putative 3.6.4.13
PF3D7_1251500 ATP-dependent RNA helicase drs1, putative 3.6.4.13
PF3D7_0422700 eukaryotic initiation factor 4A-III, putative
PF3D7_1021500 ATP-dependent RNA helicase ROK1, putative 3.6.4.13
PF3D7_0527900 ATP-dependent rna helicase ddx41, putative 3.6.4.13
PF3D7_1302700 ATP-dependent RNA helicase  dhr1, putative 3.6.4.13
PF3D7_1445900
ATP-dependent RNA helicase ddx17 3.6.4.13
PF3D7_0602100 ATP-dependent RNA helicase, mtr4 3.6.4.13
PF3D7_0504400
ATP-dependent helicase, putative 3.6.1.3
PF3D7_0320800
ATP-dependent RNA helicase DDX6 3.6.4.13
PF3D7_0807100
parasite specific helicase 3 3.6.4.13
PF3D7_0810600 ATP-dependent RNA helicase dbp1, putative 3.6.4.13
PF3D7_1459000
ATP-dependent RNA helicase DBP5 3.6.4.13
PF3D7_1468700
eukaryotic initiation factor 4A helicase 45 3.6.4.12
PF3D7_0321600 ATP-dependent RNA helicase ddx42, putative 3.6.4.13
PF3D7_0821300 ATP-dependent RNA helicase  dhx36, putative 3.6.4.13
PF3D7_0909900 helicase ski2w 3.6.4.13
PF3D7_0917600
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43, putative 3.6.4.13
PF3D7_0209800
ATP-dependent RNA helicase UAP56 3.6.4.13
PF3D7_1231600 pre-mRNA-splicing factor ATP-dependent RNA helicase PRP2, putative 3.6.4.13
PF3D7_0508700 pre-mRNA-processing ATP-dependent RNA helicase PRP5, putative 3.6.4.13
PF3D7_1364300
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 3.6.4.13
PF3D7_1030100
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22, putative 3.6.4.13
PF3D7_0518500
ATP-dependent RNA helicase DDX23, putative 3.6.4.13
PF3D7_1439100 DEAD/DEAH box helicase, putative 3.6.4.13
PF3D7_0422500 pre-mRNA-splicing helicase BRR2, putative 3.6.4.13
PF3D7_0703500
erythrocyte membrane-associated antigen
PF3D7_1005500
regulator of nonsense transcripts 1, putative
PF3D7_0504200 ATP-dependent RNA helicase ddx27, putative 3.6.4.13
PF3D7_0903400 ATP-dependent RNA helicase ddx60, putative 3.6.4.13
PF3D7_1031500
ATP-dependent DNA helicase ddx3x 3.6.4.13
PF3D7_1241800 ATP-dependent RNA helicase DBP9, putative 3.6.4.13
PF3D7_0521700 ATP-dependent RNA helicase ddx1, putative 3.6.4.13
PF3D7_0310500 DEAD box helicase, putative 3.6.4.13
PF3D7_0405000 ATP-dependent RNA helicase ddx51, putative 3.6.4.13
PF3D7_1202000
ATP-dependent DNA/RNA helicase PSH2 3.6.4.13
PF3D7_1445200 ATP-dependent RNA helicase MAK5, putative 3.6.4.13
PF3D7_0411400 DEAD box ATP-dependent RNA helicase, putative 3.6.4.13
PF3D7_0103600
ATP-dependent DNA/RNA helicase psh1 3.6.4.13
PF3D7_1313400 DEAD box helicase, putative 3.6.1.3
K homology PF3D7_0605100 KH domain-containing protein, putative
PF3D7_1415300 RNA-binding protein Nova-1, putative
PF3D7_0623600 splicing factor-like protein, putative
PF3D7_1465900 40S ribosomal protein S3
PF3D7_0208200 KRR1 small subunit processome component, putative
PF3D7_1469300 pre-rRNA-processing protein pno1, putative
PF3D7_1435800 GTPase Era, putative 3.6.5.2
PF3D7_0302800 RNA-binding protein, putative
PF3D7_0510100 kh domain-containing protein, putative
PF3D7_1011800
PRE-binding protein
PF3D7_1359600 conserved Plasmodium protein, unknown function
Fem-3 binding factor PUF PF3D7_0518700 mRNA-binding protein PUF1
PF3D7_0417100 mRNA-binding protein PUF2
PF3D7_0621300
mRNA-binding protein puf3
Acetylation Lowers Binding Affinity Alba PF3D7_0814200
DNA/RNA-binding protein Alba 1
PF3D7_1346300
DNA/RNA-binding protein Alba 2
PF3D7_1006200
DNA/RNA-binding protein Alba 3
PF3D7_1347500
DNA/RNA-binding protein Alba 4
PF3D7_0216200 alba domain-containing protein, putative
PF3D7_1202800
conserved Plasmodium protein, unknown function
PF3D7_0418700 RNA-binding protein NOB1, putative
PF3D7_1443800
pre-mrna-splicing factor cwc24
PF3D7_1008600 zinc finger (ccch type) protein, putative
PF3D7_0525000 zinc finger protein, putative
PF3D7_0906600 zinc finger protein, putative
PF3D7_1425600 zinc finger protein, putative
PF3D7_1358600 zinc finger protein, putative
PF3D7_1019300 zinc finger protein, putative
PF3D7_1210200 zinc finger protein, putative
PF3D7_1315400 zinc finger (CCCH type) protein, putative
PF3D7_1464200 zinc finger ccch domain-containing protein, putative
PF3D7_1468400
zinc finger protein, putative
PF3D7_1244800 translation machinery-associated protein 46, putative
PF3D7_0315600 zinc finger protein, putative
PF3D7_0602000 zinc finger protein, putative
PF3D7_0818100
zinc finger protein, putative
PF3D7_1134600 zinc finger protein, putative
PF3D7_1207200 zinc finger protein, putative
PF3D7_1220000 zinc finger protein, putative
PF3D7_1220000 zinc finger protein, putative
PF3D7_0522900 zinc finger protein, putative
PF3D7_0812700 U1 small nuclear ribonucleoprotein c, putative
PF3D7_1243100 zinc finger protein, putative
PF3D7_0408300 zinc finger ran-binding domain-containing protein 2, putative
PF3D7_0619900 splicing factor 3A subunit 2, putative
PF3D7_0924700 splicing factor 3A subunit 3, putative
PF3D7_1464400 zinc finger protein, putative
PF3D7_0409800 zinc finger protein, putative
PF3D7_0315800 zinc finger protein, putative, HAKAI
PF3D7_1431200 OST-HTH associated domain protein, putative
PF3D7_1009400 zinc finger protein, putative
PF3D7_1450400 E3 ubiquitin-protein ligase znf598, putative
PF3D7_1468900 zinc finger protein, putative
Pseudouridine synthase and archaeosine
transglycosylase (PUA) domain PUA		 PF3D7_1417500 H/ACA ribonucleoprotein complex subunit 4, putative 5.4.99.-
PF3D7_1466700 60s ribosome subunit biogenesis protein nip7, putative
PF3D7_0907600 translation initiation factor SUI1, putative
PF3D7_0529500 cell cycle regulator protein, putative
PF3D7_1450600
S-adenosylmethionine-dependent methyltransferase, putative 2.1.1.2
YT521-B homology YTH PF3D7_0309800 YTH domain-containing protein 2, putative
PF3D7_1419900 YTH domain-containing protein 1, putative, YTH1
S1 RNA-binding domain PF3D7_1030100
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22, putative 3.6.4.13
PF3D7_0811900 RNA-binding protein, putative
PF3D7_0516600
translation initiation factor IF-2 sporozoite surface antigen MB2
PF3D7_1027400 DNA-directed RNA polymerase II subunit RPB7, putative 2.7.7.6
Suppressor-of-White-APricot, a splicing regulator  SWAP PF3D7_1474500 splicing factor 3A subunit 1, putative
PF3D7_1402700 U2 snRNP-associated SURP motif-containing protein, putative
PF3D7_0610200 RNA-binding protein, putative
PF3D7_0624200 surp domain-containing protein, putative
PF3D7_0623100 nuclear polyadenylated rna-binding protein nab2
PF3D7_0311100 pre-mRNA splicing factor, putative
G-patch PF3D7_1454000 RNA-binding protein, putative
PF3D7_1110300 g-patch domain-containing protein, putative
PF3D7_0531400 g-patch domain-containing protein, putative
PF3D7_0208700 shs2 domain-containing protein, putative 2.7.7.6
PF3D7_0510100 kh domain-containing protein, putative
Online articles related to RNA-binding proteins retrieved from PubMed