RNA binding proteins
Reddy BP, Shrestha S, Hart KJ, Liang X, Kemirembe K, Cui L, Lindner SE. A bioinformatic survey of RNA-binding proteins in Plasmodium. BMC Genomics. 2015 Nov 2;16(1):890. PMID: 26525978.
RNA-binding domain PfID Annotation EC Transcript
34238 RRM - RNA-Recognition Motif PF3D7_0414500 RNA-binding protein, putative
34416 PF3D7_1468800 splicing factor U2AF large subunit, putative
34335 PF3D7_1119300 splicing factor U2AF small subunit, putative
34306 PF3D7_0920900 U4/U6 snRNA-associated-splicing factor, putative
34311 PF3D7_0935000 U2 small nuclear ribonucleoprotein B'', putative
34386 PF3D7_1402700 U2 snRNP-associated SURP motif-containing protein, putative
34385 PF3D7_1367100 U1 small nuclear ribonucleoprotein 70 kda homolog, putative
34363 PF3D7_1306900 U1 small nuclear ribonucleoprotein A, putative
34350 PF3D7_1224300
polyadenylate-binding protein 1, putative
34280 PF3D7_0629400 polyadenylate-binding protein 3, putative
34307 PF3D7_0923900 polyadenylate-binding protein 2, putative
34383 PF3D7_1360900 RNA-binding protein, putative
34399 PF3D7_1438800 mRNA-binding protein PUF3
34270 PF3D7_0606500 polypyrimidine tract binding protein, putative
34355 PF3D7_1236100 clustered-asparagine-rich protein
34389 PF3D7_1409800 CUGBP Elav-like family member 2
34298 PF3D7_0823200 RNA-binding protein, putative
34380 PF3D7_1359400
Cugbp Elav-like family member 1
34408 PF3D7_1454000 RNA-binding protein, putative
34252 PF3D7_0517300
serine/arginine-rich splicing factor 1
34313 PF3D7_1004400 RNA-binding protein, putative
34336 PF3D7_1119800
alternative splicing factor ASF-1, putative
34245 PF3D7_0503300
serine/arginine-rich splicing factor 12
34316 PF3D7_1006800
G-strand-binding protein 2
34312 PF3D7_1002400 transformer-2 protein homolog beta, putative
34324 PF3D7_1022400
serine/arginine-rich splicing factor 4
34304 PF3D7_0916700 RNA-binding protein musashi, putative
34348 PF3D7_1217200 multiple rna-binding domain-containing protein 1
34351 PF3D7_1224900 splicing factor 3B subunit 6, putative
34395 PF3D7_1420000 splicing factor 3B subunit 4, putative
34371 PF3D7_1321700 splicing factor 1
34360 PF3D7_1248200 RNA-binding protein, putative
34321 PF3D7_1020000 RNA-binding protein 34, putative
34250 PF3D7_0515000 pre-mRNA-splicing factor CWC2, putative
34287 PF3D7_0728900 RNA-binding protein, putative
34230 PF3D7_0319500 RNA-binding protein, putative
34333 PF3D7_1112400 nucleic acid binding protein, putative
34369 PF3D7_1317400 zinc finger protein, putative
34239 PF3D7_0415500 nuclear cap-binding protein subunit 2, putative
34272 PF3D7_0615700 tho complex subunit 4, putative
34294 PF3D7_0815600 eukaryotic translation initiation factor 3 subunit G, putative
34310 PF3D7_0933000 cstf domain-containing protein, putative
34325 PF3D7_1024200 RNA-binding protein, putative
34346 PF3D7_1207500 RNA-binding protein, putative
34370 PF3D7_1320900 RNA-binding protein, putative
34388 PF3D7_1406000 RNA-binding protein 8a, putative
34253 PF3D7_0517700 eukaryotic translation initiation factor 3 subunit B, putative
34354 PF3D7_1235300 CCR4-NOT transcription complex subunit 4, putative
34269 PF3D7_0606100 RNA-binding protein, putative
34330 PF3D7_1107100 nucleic acid binding protein, putative
34339 PF3D7_1131000 RNA-binding protein s1, putative
34382 PF3D7_1360100 RNA-binding protein, putative
34291 PF3D7_0812500 RNA-binding protein, putative
34234 PF3D7_0405400 pre-mRNA-processing-splicing factor 8, putative
34276 PF3D7_0623400 mei2-like RNA-binding protein, putative, mei2
34365 PF3D7_1310700
PhIL1-interacting protein PhIP
34368 PF3D7_1317300 RNA-binding protein, putative
34271 PF3D7_0610200 RNA-binding protein, putative
34372 PF3D7_1326300 RNA-binding protein, putative
34284 PF3D7_0716000 RNA-binding protein, putative
34332 PF3D7_1110400 RNA-binding protein, putative
34266 PF3D7_0603100 RNA-binding protein, putative
34387 PF3D7_1405900 RNA-binding protein, putative
34286 PF3D7_0723900 RNA-binding protein, putative, RBM15
34309 PF3D7_0929200 RNA-binding protein, putative
34373 PF3D7_1330800 RNA-binding protein, putative
34240 PF3D7_0416000 RNA-binding protein, putative
34296 PF3D7_0820100 RNA-binding protein, putative
34340 PF3D7_1132100 RNA-binding protein, putative
34219 PF3D7_0205700 RNA-binding protein, putative
34323 PF3D7_1022000 RNA-binding protein uis12, putative
34403 PF3D7_1445600 RNA-binding protein, putative
34342 PF3D7_1139100 RNA-binding protein, putative
34377 PF3D7_1353400 Ran-binding protein, putative
34338 PF3D7_0617300 RNA-binding protein, putative
34358 PF3D7_1135500 RNA-binding protein, putative
34254 PF3D7_1126800 alternative splicing factor sr-mg, putative
34260 PF3D7_1244400 RNA-binding protein, putative
34267 PF3D7_0518100
protein amr2
34279 PF3D7_0526000 RAP protein, putative
34283 PF3D7_0604800 RAP protein, putative
34326 PF3D7_0628900 RAP protein, putative
34337 PF3D7_0707800 RAP protein, putative
34352 PF3D7_1024600 RAP protein, putative
34378 PF3D7_1123600 RAP protein, putative
34407 PF3D7_1226500 heptatricopeptide repeat and rap domain-containing protein, putative
34419 PF3D7_1355200 RAP protein, putative
34334 PF3D7_1453600 RAP protein, putative
34278 PF3D7_1470600
RAP21
34223 PF3D7_1114400 rap protein, putative
34285 DEXD Helicase PF3D7_0623700 ATP-dependent RNA helicase suv3, putative 3.6.4.13
34393 PF3D7_0218400 ATPdependent RNA helicase ddx47, putative 3.6.4.13
34392 PF3D7_0721300
ATP-dependent DNA helicase DDX31 3.6.4.13
34281 PF3D7_1419100
ATP-dependent RNA helicase ddx55 3.6.4.13
34364 PF3D7_1418900 ATP-dependent RNA helicase DBP4, putative 3.6.4.13
34374 PF3D7_0630900 ATP-dependent RNA helicase HAS1 3.6.4.13
34299 PF3D7_1307300 ATP-dependent RNA helicase dbp6 3.6.4.13
34361 PF3D7_1332700 ATP-dependent RNA helicase DBP8, putative 3.6.4.13
34244 PF3D7_0827000 ATP-dependent RNA helicase DBP10, putative 3.6.4.13
34322 PF3D7_1251500 ATP-dependent RNA helicase drs1, putative 3.6.4.13
34261 PF3D7_0422700 eukaryotic initiation factor 4A-III, putative
34362 PF3D7_1021500 ATP-dependent RNA helicase ROK1, putative 3.6.4.13
34404 PF3D7_0527900 ATP-dependent rna helicase ddx41, putative 3.6.4.13
34265 PF3D7_1302700 ATP-dependent RNA helicase  dhr1, putative 3.6.4.13
34247 PF3D7_1445900
ATP-dependent RNA helicase ddx17 3.6.4.13
34231 PF3D7_0602100 ATP-dependent RNA helicase, mtr4 3.6.4.13
34288 PF3D7_0504400
ATP-dependent helicase, putative 3.6.1.3
34289 PF3D7_0320800
ATP-dependent RNA helicase DDX6 3.6.4.13
34409 PF3D7_0807100
parasite specific helicase 3 3.6.4.13
34415 PF3D7_0810600 ATP-dependent RNA helicase dbp1, putative 3.6.4.13
34232 PF3D7_1459000
ATP-dependent RNA helicase DBP5 3.6.4.13
34297 PF3D7_1468700
eukaryotic initiation factor 4A helicase 45 3.6.4.12
34303 PF3D7_0321600 ATP-dependent RNA helicase ddx42, putative 3.6.4.13
34305 PF3D7_0821300 ATP-dependent RNA helicase  dhx36, putative 3.6.4.13
34221 PF3D7_0909900 helicase ski2w 3.6.4.13
34353 PF3D7_0917600
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43, putative 3.6.4.13
34248 PF3D7_0209800
ATP-dependent RNA helicase UAP56 3.6.4.13
34384 PF3D7_1231600 pre-mRNA-splicing factor ATP-dependent RNA helicase PRP2, putative 3.6.4.13
34328 PF3D7_0508700 pre-mRNA-processing ATP-dependent RNA helicase PRP5, putative 3.6.4.13
34255 PF3D7_1364300
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 3.6.4.13
34400 PF3D7_1030100
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22, putative 3.6.4.13
34243 PF3D7_0518500
ATP-dependent RNA helicase DDX23, putative 3.6.4.13
34282 PF3D7_1439100 DEAD/DEAH box helicase, putative 3.6.4.13
34314 PF3D7_0422500 pre-mRNA-splicing helicase BRR2, putative 3.6.4.13
34246 PF3D7_0703500
erythrocyte membrane-associated antigen
34300 PF3D7_1005500 regulator of nonsense transcripts 1, putative
34329 PF3D7_0504200 ATP-dependent RNA helicase ddx27, putative 3.6.4.13
34356 PF3D7_0903400 ATP-dependent RNA helicase ddx60, putative 3.6.4.13
34257 PF3D7_1031500
ATP-dependent DNA helicase ddx3x 3.6.4.13
34226 PF3D7_1241800 ATP-dependent RNA helicase DBP9, putative 3.6.4.13
34233 PF3D7_0521700 ATP-dependent RNA helicase ddx1, putative 3.6.4.13
34343 PF3D7_0310500 DEAD box helicase, putative 3.6.4.13
34402 PF3D7_0405000 ATP-dependent RNA helicase ddx51, putative 3.6.4.13
34237 PF3D7_1202000
ATP-dependent DNA/RNA helicase PSH2 3.6.4.13
34218 PF3D7_1445200 ATP-dependent RNA helicase MAK5, putative 3.6.4.13
34366 PF3D7_0411400 DEAD box ATP-dependent RNA helicase, putative 3.6.4.13
34268 PF3D7_0103600
ATP-dependent DNA/RNA helicase psh1 3.6.4.13
34390 PF3D7_1313400 DEAD box helicase, putative 3.6.1.3
34277 K homology PF3D7_0605100 KH domain-containing protein, putative
34412 PF3D7_1415300 RNA-binding protein Nova-1, putative
34220 PF3D7_0623600 splicing factor-like protein, putative
34418 PF3D7_1465900 40S ribosomal protein S3
34398 PF3D7_0208200 KRR1 small subunit processome component, putative
34224 PF3D7_1469300 pre-rRNA-processing protein pno1, putative
34249 PF3D7_1435800 GTPase Era, putative 3.6.5.2
34319 PF3D7_0302800 RNA-binding protein, putative
34381 PF3D7_0510100 kh domain-containing protein, putative
34256 PF3D7_1011800 PRE-binding protein
34241 PF3D7_1359600 conserved Plasmodium protein, unknown function
34274 Fem-3 binding factor PUF PF3D7_0518700 mRNA-binding protein PUF1
34293 PF3D7_0417100 mRNA-binding protein PUF2
34375 PF3D7_0621300
mRNA-binding protein puf3
34315 Acetylation Lowers Binding Affinity Alba PF3D7_0814200
DNA/RNA-binding protein Alba 1
34376 PF3D7_1346300
DNA/RNA-binding protein Alba 2
34222 PF3D7_1006200
DNA/RNA-binding protein Alba 3
34344 PF3D7_1347500
DNA/RNA-binding protein Alba 4
34242 PF3D7_0216200 alba domain-containing protein, putative
34401 PF3D7_1202800 conserved Plasmodium protein, unknown function
34317 PF3D7_0418700 RNA-binding protein NOB1, putative
34259 PF3D7_1443800 pre-mrna-splicing factor cwc24
34301 PF3D7_1008600 zinc finger (ccch type) protein, putative
34396 PF3D7_0525000 zinc finger protein, putative
34379 PF3D7_0906600 zinc finger protein, putative
34320 PF3D7_1425600 zinc finger protein, putative
34347 PF3D7_1358600 zinc finger protein, putative
34367 PF3D7_1019300 zinc finger protein, putative
34410 PF3D7_1210200 zinc finger protein, putative
34414 PF3D7_1315400 zinc finger (CCCH type) protein, putative