Cell cycle compartment assocation between P. falciparum cell cycle perturbed transcriptomes
and that of yeast non-quiescent and quiescent transcriptomes
van Biljon R, Niemand J, van Wyk R, Clark K, Verlinden B, Abrie C, von Grüning H, Smidt W, Smit A, Reader J, Painter H, Llinás M, Doerig C, Birkholtz LM. Inducing controlled cell cycle arrest and re-entry during asexual proliferation of Plasmodium falciparum malaria parasites. Sci Rep. 2018 ;8(1):16581. PMID: 30409996
Cell cycle stage PfID Annotation EC Transcript
36899 Cell cycle passage through START PF3D7_0517700 eukaryotic translation initiation factor 3 subunit B, putative
37013 PF3D7_1367700
alanine--tRNA ligase 6.1.1.7
36913 PF3D7_0622800
leucine--tRNA ligase, putative 6.1.1.4
36886 PF3D7_0318200 DNA-directed RNA polymerase II subunit RPB1 2.7.7.6
36961 PF3D7_1103800 CCR4-NOT transcription complex subunit not1-g, putative
37007 PF3D7_1356900
protein kinase 5 2.7.11.22
37010 Cell cycle progression in G1 PF3D7_1362200
RuvB-like helicase 3 3.6.4.12
36974 PF3D7_1208600 mitochondrial import inner membrane translocase subunit TIM10, putative
37029 PF3D7_1448000 U3 small nucleolar RNA-associated protein 12, putative
37012 PF3D7_1367600 ribosome biogenesis protein MRT4, putative
36928 PF3D7_0802300 periodic tryptophan protein 2, putative
36875 PF3D7_0106400 pre-rRNA-processing protein TSR2, putative
36997 PF3D7_1332800 eukaryotic translation initiation factor 6, putative
36957 PF3D7_1026800
40S ribosomal protein S2
37026 PF3D7_1441200 60S ribosomal protein L1, putative
37008 PF3D7_1358100 sas10 domain-containing protein, putative
36941 PF3D7_0914300 met-10+ like protein, putative 2.1.1.-
36998 PF3D7_1338200 60s ribosomal protein l6, putative
36996 PF3D7_1331800 60S ribosomal protein L23, putative
37015 PF3D7_1407500 multifunctional methyltransferase subunit TRM112, putative 2.1.1.32
36899 PF3D7_0517700 eukaryotic translation initiation factor 3 subunit B, putative
36979 PF3D7_1230900
serine/threonine protein kinase RIO1, putative 2.7.11.1
36943 PF3D7_0925200 ribosomal RNA-processing protein 8, putative 2.1.1.-
36953 PF3D7_1013100 U3 small nucleolar RNA-associated protein 13, putative
36902 PF3D7_0522800 pre-mRNA-splicing factor BUD31, putative
36959 PF3D7_1027800 60S ribosomal protein L3
37037 PF3D7_1468700
eukaryotic initiation factor 4A helicase 45 3.6.4.12
36896 PF3D7_0516200 40S ribosomal protein S11
36881 PF3D7_0307200 60S ribosomal protein L7, putative
36884 PF3D7_0315100
eukaryotic translation initiation factor 4E
36945 PF3D7_0933200 calcyclin binding protein, putative
37013 PF3D7_1367700
alanine--tRNA ligase 6.1.1.7
36993 PF3D7_1323100 60S ribosomal protein L6, putative
36937 PF3D7_0821700 60S ribosomal protein L22, putative
37031 PF3D7_1460100
FYVE and coiled-coil domain-containing protein
37020 PF3D7_1424400 60S ribosomal protein L7-3, putative
36897 PF3D7_0517000 60S ribosomal protein L12, putative
36983 PF3D7_1242700 40S ribosomal protein S17, putative
36962 PF3D7_1104000
phenylalanine--tRNA ligase beta subunit 6.1.1.20
36874 PF3D7_0102900
aspartate--tRNA ligase 6.1.1.12
36976 PF3D7_1212700 eukaryotic translation initiation factor 3 subunit A, putative
36927 PF3D7_0722600 U3 small nucleolar RNA-associated protein 7, putative
37028 PF3D7_1442300
tRNA import protein tRIP
36913 PF3D7_0622800
leucine--tRNA ligase, putative 6.1.1.4
37032 PF3D7_1460700 60S ribosomal protein L27
36925 PF3D7_0720100 pre-rRNA-processing protein ESF2, putative
36929 PF3D7_0803100 U3 small nucleolar RNA-associated protein 14, putative
36876 PF3D7_0109500 N-acetyltransferase, putative 2.3.1.1
36892 PF3D7_0415500 nuclear cap-binding protein subunit 2, putative
37001 PF3D7_1342700 DNA-directed RNA polymerases I, II, and III subunit RPABC4, putative
37000 PF3D7_1342000 40S ribosomal protein S6
36934 PF3D7_0813900 40S ribosomal protein S16, putative
36885 PF3D7_0317600 40S ribosomal protein S11, putative
36900 PF3D7_0519400 40S ribosomal protein S24
36924 PF3D7_0719700 40S ribosomal protein S10, putative
36995 PF3D7_1329100
myosin F
38974 PF3D7_1468100
MORC family protein
37035 PF3D7_1464700 ATP synthase (C/AC39) subunit, putative 3.6.3.14
36969 PF3D7_1126200 40S ribosomal protein S18, putative
36977 PF3D7_1213800
prolyl-tRNA synthetase proline--tRNA ligase 6.1.1.15
36895 PF3D7_0511700
EKC/KEOPS complex subunit CGI121
36880 PF3D7_0306900 40S ribosomal protein S23, putative
36887 PF3D7_0320800
ATP-dependent RNA helicase DDX6 3.6.4.13
36911 PF3D7_0611700 60S ribosomal protein L39
36919 PF3D7_0705700 40S ribosomal protein S29, putative
36901 PF3D7_0520000 40S ribosomal protein S9, putative
36960 PF3D7_1037300
ADP, ATP carrier protein 1, aac1
36978 PF3D7_1220100 pre-mRNA-processing factor 17, putative
37019 PF3D7_1418000 ubiquitin fusion degradation protein UFD1, putative
36882 PF3D7_0309600
60S acidic ribosomal protein P2
36910 PF3D7_0607000 translation initiation factor IF-2, putative
37006 PF3D7_1356800
serine/threonine protein kinase ark3, putative 2.7.11.1
36947 PF3D7_0934500 V-type proton ATPase subunit E, putative 3.6.3.14
36915 PF3D7_0626800
pyruvate kinase 2.7.1.40
36898 PF3D7_0517400 FACT complex subunit SPT16, putative
36909 PF3D7_0605800
DNA repair protein RAD50, putative
36951 PF3D7_1008900
adenylate kinase 2.7.4.3
36992 PF3D7_1319700
protein phosphatase PP2A regulatory subunit A, putative 3.1.3.16
36967 PF3D7_1114700
cyclin-dependent-like kinase clk3 2.7.11.1
36907 PF3D7_0603200 mitochondrial chaperone BCS1, putative
36877 PF3D7_0204900 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial, putative 2.1.1.201
37033 PF3D7_1461300 40S ribosomal protein S28e, putative
36954 PF3D7_1015100 cwc16 domain-containing protein, putative
36912 PF3D7_0619400
cell division cycle protein 48 homologue, putative
36926 PF3D7_0722100 protein pelota homolog, putative
36891 PF3D7_0414000
structural maintenance of chromosomes protein 3, putative
PF3D7_0509900 nse4 domain-containing protein, putative
36893 PF3D7_0507700 nuclear protein localization protein 4, putative
36952 PF3D7_1012700 NLI interacting factor-like phosphatase, putative 3.1.3.16
36894 PF3D7_0511000
translationally-controlled tumor protein homolog
37011 PF3D7_1367000 suppressor of kinetochore protein 1, putative
36968 PF3D7_1123800 structural maintenance of chromosomes protein 5, putative
36986 PF3D7_1303100 methyltransferase, putative 2.1.1.37
37007 PF3D7_1356900
protein kinase 5 2.7.11.22
36930 PF3D7_0803400 DNA repair and recombination protein RAD54, putative 3.6.4.12
36932 PF3D7_0811000 cullin-1, putative
37014 PF3D7_1368800 DNA repair endonuclease XPF, putative 3.1.21.1
37034 PF3D7_1462700
cytochrome c1, heme protein, mitochondrial, putative, CYTC1
36923 PF3D7_0719500 LEM3/CDC50 family protein, putative
36972 PF3D7_1144900
ras-related protein Rab-6 3.6.5.2
36994 PF3D7_1325600
mitochondrial fission 1 protein, putative
36981 PF3D7_1241600 S-adenosylmethionine mitochondrial carrier protein, SAMC
36914 Cell cycle progression in G2/M PF3D7_0624500 anaphase-promoting complex subunit 11, putative
36921 PF3D7_0714000
histone H2B variant
37017 PF3D7_1415000
uracil-DNA glycosylase 3.2.2.27
36987 PF3D7_1304000 condensin complex subunit 2, putative, caph
37024 PF3D7_1434200
calmodulin
36958 PF3D7_1027700
centrin-3
36888 PF3D7_0320900
H2A.Z
36989 PF3D7_1311500
26S protease regulatory subunit 7, putative; 26S proteasome AAA-ATPase subunit RPT1, putative 3.6.4.8
36970 PF3D7_1129200 26S proteasome regulatory subunit RPN7, putative
37038 PF3D7_1470900
proteasome subunit beta type-2, putative 3.4.25.1
36984 PF3D7_1248900
26S protease regulatory subunit 8, putative 3.6.4.8
36949 PF3D7_1006600 phosducin-like protein, putative
36922 PF3D7_0718500 prefoldin subunit 3, putative
37023 PF3D7_1433500
DNA topoisomerase 2 5.99.1.3
36938 PF3D7_0904800 replication protein A1, small fragment
36931 PF3D7_0803700
tubulin gamma chain
36942 PF3D7_0915100
SUMO-conjugating enzyme UBC9
36999 PF3D7_1340100
exosome complex component RRP42, putative 2.7.7.56
36903 PF3D7_0524000 karyopherin beta
36920 PF3D7_0708400
heat shock protein 90
37030 PF3D7_1450900 acetyl-CoA acetyltransferase, putative 2.3.1.9
36966 PF3D7_1114200 GTPase-activating protein, putative
36936 PF3D7_0815200 importin beta, putative
36964 PF3D7_1110200 pre-mRNA-processing factor 6, putative
36973 Cell cycle progression in S PF3D7_1201500 XPA binding protein 1, putative
36944 PF3D7_0932800
importin alpha re-exporter
36978 PF3D7_1220100 pre-mRNA-processing factor 17, putative
36992 PF3D7_1319700
protein phosphatase PP2A regulatory subunit A, putative 3.1.3.16
36980 PF3D7_1234300 DNA polymerase epsilon subunit B, putative 2.7.7.7
36946 PF3D7_0934100
TFIIH basal transcription factor complex helicase XPD subunit 3.6.4.12
36955 PF3D7_1017000
DNA polymerase delta catalytic subunit 2.7.7.7
36985 PF3D7_1251300
thymidylate kinase 2.7.4.9
37003 PF3D7_1347100
DNA topoisomerase 3 5.99.1.2
36879 PF3D7_0219600
replication factor c subunit 1
36965 PF3D7_1111100 replication factor C subunit 5, putative
36988 PF3D7_1304100
DNA ligase I 6.5.1.1
36982 PF3D7_1241700