Cell cycle compartment assocation between P. falciparum cell cycle perturbed transcriptomes
and that of yeast non-quiescent and quiescent transcriptomes
van Biljon R, Niemand J, van Wyk R, Clark K, Verlinden B, Abrie C, von Grüning H, Smidt W, Smit A, Reader J, Painter H, Llinás M, Doerig C, Birkholtz LM. Inducing controlled cell cycle arrest and re-entry during asexual proliferation of Plasmodium falciparum malaria parasites. Sci Rep. 2018 ;8(1):16581. PMID: 30409996
Cell cycle stage PfID Annotation EC Transcript
Cell cycle passage through START PF3D7_0517700 eukaryotic translation initiation factor 3 subunit B, putative
PF3D7_1367700
alanine--tRNA ligase 6.1.1.7
PF3D7_0622800
leucine--tRNA ligase, putative 6.1.1.4
PF3D7_0318200 DNA-directed RNA polymerase II subunit RPB1 2.7.7.6
PF3D7_1103800 CCR4-NOT transcription complex subunit not1-g, putative
PF3D7_1356900
protein kinase 5 2.7.11.22
Cell cycle progression in G1 PF3D7_1362200
RuvB-like helicase 3 3.6.4.12
PF3D7_1208600 mitochondrial import inner membrane translocase subunit TIM10, putative
PF3D7_1448000 U3 small nucleolar RNA-associated protein 12, putative
PF3D7_1367600 ribosome biogenesis protein MRT4, putative
PF3D7_0802300 periodic tryptophan protein 2, putative
PF3D7_0106400 pre-rRNA-processing protein TSR2, putative
PF3D7_1332800 eukaryotic translation initiation factor 6, putative
PF3D7_1026800
40S ribosomal protein S2
PF3D7_1441200 60S ribosomal protein L1, putative
PF3D7_1358100 sas10 domain-containing protein, putative
PF3D7_0914300 met-10+ like protein, putative 2.1.1.-
PF3D7_1338200 60s ribosomal protein l6, putative
PF3D7_1331800 60S ribosomal protein L23, putative
PF3D7_1407500 multifunctional methyltransferase subunit TRM112, putative 2.1.1.32
PF3D7_0517700 eukaryotic translation initiation factor 3 subunit B, putative
PF3D7_1230900
serine/threonine protein kinase RIO1, putative 2.7.11.1
PF3D7_0925200 ribosomal RNA-processing protein 8, putative 2.1.1.-
PF3D7_1013100 U3 small nucleolar RNA-associated protein 13, putative
PF3D7_0522800 pre-mRNA-splicing factor BUD31, putative
PF3D7_1027800 60S ribosomal protein L3
PF3D7_1468700
eukaryotic initiation factor 4A helicase 45 3.6.4.12
PF3D7_0516200 40S ribosomal protein S11
PF3D7_0307200 60S ribosomal protein L7, putative
PF3D7_0315100
eukaryotic translation initiation factor 4E
PF3D7_0933200 calcyclin binding protein, putative
PF3D7_1367700
alanine--tRNA ligase 6.1.1.7
PF3D7_1323100 60S ribosomal protein L6, putative
PF3D7_0821700 60S ribosomal protein L22, putative
PF3D7_1460100
FYVE and coiled-coil domain-containing protein
PF3D7_1424400 60S ribosomal protein L7-3, putative
PF3D7_0517000 60S ribosomal protein L12, putative
PF3D7_1242700 40S ribosomal protein S17, putative
PF3D7_1104000
phenylalanine--tRNA ligase beta subunit 6.1.1.20
PF3D7_0102900
aspartate--tRNA ligase 6.1.1.12
PF3D7_1212700 eukaryotic translation initiation factor 3 subunit A, putative
PF3D7_0722600 U3 small nucleolar RNA-associated protein 7, putative
PF3D7_1442300
tRNA import protein tRIP
PF3D7_0622800
leucine--tRNA ligase, putative 6.1.1.4
PF3D7_1460700 60S ribosomal protein L27
PF3D7_0720100 pre-rRNA-processing protein ESF2, putative
PF3D7_0803100 U3 small nucleolar RNA-associated protein 14, putative
PF3D7_0109500 N-acetyltransferase, putative 2.3.1.1
PF3D7_0415500 nuclear cap-binding protein subunit 2, putative
PF3D7_1342700 DNA-directed RNA polymerases I, II, and III subunit RPABC4, putative
PF3D7_1342000 40S ribosomal protein S6
PF3D7_0813900 40S ribosomal protein S16, putative
PF3D7_0317600 40S ribosomal protein S11, putative
PF3D7_0519400 40S ribosomal protein S24
PF3D7_0719700 40S ribosomal protein S10, putative
PF3D7_1329100
myosin F
PF3D7_1468100
MORC family protein
PF3D7_1464700 ATP synthase (C/AC39) subunit, putative 3.6.3.14
PF3D7_1126200 40S ribosomal protein S18, putative
PF3D7_1213800
prolyl-tRNA synthetase proline--tRNA ligase 6.1.1.15
PF3D7_0511700
EKC/KEOPS complex subunit CGI121
PF3D7_0306900 40S ribosomal protein S23, putative
PF3D7_0320800
ATP-dependent RNA helicase DDX6 3.6.4.13
PF3D7_0611700 60S ribosomal protein L39
PF3D7_0705700 40S ribosomal protein S29, putative
PF3D7_0520000 40S ribosomal protein S9, putative
PF3D7_1037300
ADP, ATP carrier protein 1, aac1
PF3D7_1220100 pre-mRNA-processing factor 17, putative
PF3D7_1418000 ubiquitin fusion degradation protein UFD1, putative
PF3D7_0309600
60S acidic ribosomal protein P2
PF3D7_0607000 translation initiation factor IF-2, putative
PF3D7_1356800
serine/threonine protein kinase ark3, putative 2.7.11.1
PF3D7_0934500 V-type proton ATPase subunit E, putative 3.6.3.14
PF3D7_0626800
pyruvate kinase 2.7.1.40
PF3D7_0517400 FACT complex subunit SPT16, putative
PF3D7_0605800
DNA repair protein RAD50, putative
PF3D7_1008900
adenylate kinase 2.7.4.3
PF3D7_1319700
protein phosphatase PP2A regulatory subunit A, putative 3.1.3.16
PF3D7_1114700
cyclin-dependent-like kinase clk3 2.7.11.1
PF3D7_0603200 mitochondrial chaperone BCS1, putative
PF3D7_0204900 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial, putative 2.1.1.201
PF3D7_1461300 40S ribosomal protein S28e, putative
PF3D7_1015100 cwc16 domain-containing protein, putative
PF3D7_0619400
cell division cycle protein 48 homologue, putative
PF3D7_0722100 protein pelota homolog, putative
PF3D7_0414000
structural maintenance of chromosomes protein 3, putative
PF3D7_0509900 nse4 domain-containing protein, putative
PF3D7_0507700 nuclear protein localization protein 4, putative
PF3D7_1012700 NLI interacting factor-like phosphatase, putative 3.1.3.16
PF3D7_0511000
translationally-controlled tumor protein homolog
PF3D7_1367000 suppressor of kinetochore protein 1, putative
PF3D7_1123800 structural maintenance of chromosomes protein 5, putative
PF3D7_1303100 methyltransferase, putative 2.1.1.37
PF3D7_1356900
protein kinase 5 2.7.11.22
PF3D7_0803400 DNA repair and recombination protein RAD54, putative 3.6.4.12
PF3D7_0811000
cullin-1, putative
PF3D7_1368800 DNA repair endonuclease XPF, putative 3.1.21.1
PF3D7_1462700
cytochrome c1, heme protein, mitochondrial, putative, CYTC1
PF3D7_0719500 LEM3/CDC50 family protein, putative
PF3D7_1144900
ras-related protein Rab-6 3.6.5.2
PF3D7_1325600
mitochondrial fission 1 protein, putative
PF3D7_1241600 S-adenosylmethionine mitochondrial carrier protein, SAMC
Cell cycle progression in G2/M PF3D7_0624500 anaphase-promoting complex subunit 11, putative
PF3D7_0714000
histone H2B variant
PF3D7_1415000
uracil-DNA glycosylase 3.2.2.27
PF3D7_1304000 condensin complex subunit 2, putative, caph
PF3D7_1434200
calmodulin
PF3D7_1027700
centrin-3
PF3D7_0320900
H2A.Z
PF3D7_1311500
26S protease regulatory subunit 7, putative; 26S proteasome AAA-ATPase subunit RPT1, putative 3.6.4.8
PF3D7_1129200 26S proteasome regulatory subunit RPN7, putative
PF3D7_1470900
proteasome subunit beta type-2, putative 3.4.25.1
PF3D7_1248900
26S protease regulatory subunit 8, putative 3.6.4.8
PF3D7_1006600 phosducin-like protein, putative
PF3D7_0718500 prefoldin subunit 3, putative
PF3D7_1433500
DNA topoisomerase 2 5.99.1.3
PF3D7_0904800 replication protein A1, small fragment
PF3D7_0803700
tubulin gamma chain
PF3D7_0915100
SUMO-conjugating enzyme UBC9
PF3D7_1340100
exosome complex component RRP42, putative 2.7.7.56
PF3D7_0524000 karyopherin beta
PF3D7_0708400
heat shock protein 90
PF3D7_1450900 acetyl-CoA acetyltransferase, putative 2.3.1.9
PF3D7_1114200 GTPase-activating protein, putative
PF3D7_0815200 importin beta, putative
PF3D7_1110200 pre-mRNA-processing factor 6, putative
Cell cycle progression in S PF3D7_1201500 XPA binding protein 1, putative
PF3D7_0932800
importin alpha re-exporter
PF3D7_1220100 pre-mRNA-processing factor 17, putative
PF3D7_1319700
protein phosphatase PP2A regulatory subunit A, putative 3.1.3.16
PF3D7_1234300 DNA polymerase epsilon subunit B, putative 2.7.7.7
PF3D7_0934100
TFIIH basal transcription factor complex helicase XPD subunit 3.6.4.12
PF3D7_1017000
DNA polymerase delta catalytic subunit 2.7.7.7
PF3D7_1251300
thymidylate kinase 2.7.4.9
PF3D7_1347100
DNA topoisomerase 3 5.99.1.2
PF3D7_0219600
replication factor c subunit 1
PF3D7_1111100 replication factor C subunit 5, putative
PF3D7_1304100
DNA ligase I 6.5.1.1
PF3D7_1241700
replication factor C subunit 4, putative
PF3D7_1318400
structural maintenance of chromosomes protein 2
PF3D7_1361900
proliferating cell nuclear antigen 1
PF3D7_0630300 DNA polymerase epsilon catalytic subunit A, putative 2.7.7.7
PF3D7_1414400
serine/threonine protein phosphatase PP1 3.1.3.16
PF3D7_1211700 DNA replication licensing factor MCM5, putative
PF3D7_0411900 DNA polymerase alpha 2.7.7.7
PF3D7_0910900 DNA primase large subunit, putative 2.7.7.6
PF3D7_1437200
ribonucleoside-diphosphate reductase large subunit, putative 1.17.4.1
Cell cycle progression through G1/S PF3D7_0603400
trophozoite exported protein 1
PF3D7_0403700 pre-mRNA-splicing factor CLF1, putative
PF3D7_1441400
FACT complex subunit SSRP1, putative
PF3D7_0812400
karyopherin alpha
PF3D7_0312300 26S proteasome regulatory subunit RPN12, putative 3.4.25.1
PF3D7_1417800
DNA replication licensing factor MCM2 3.6.4.12
PF3D7_0705300
mediator of RNA polymerase ii transcription subunit 10, putative
PF3D7_1355100
DNA replication licensing factor MCM6
PF3D7_0705400 DNA replication licensing factor MCM7
PF3D7_0527000 DNA replication licensing factor MCM3, putative 1.3.3.6
PF3D7_1317100 DNA replication licensing factor MCM4
critical cell size at START (G1 cell-size checkpoint) PF3D7_0802300 periodic tryptophan protein 2, putative
PF3D7_1354200
phosphoinositide phosphatase sac1 3.1.3.56
PF3D7_1008400
26S protease regulatory subunit 4, putative 3.6.4.8
exit from G0 (stationary phase): delayed PF3D7_1003300 N-terminal acetyltransferase A complex catalytic subunit ARD1, putative 2.3.1.88
PF3D7_0814900
superoxide dismutase [Fe] 1.15.1.1
PF3D7_1427800
exosome complex exonuclease RRP41, putative 3.1.13.1
Maintenance of quiescence PF3D7_0528100
AP-1/2 complex subunit beta, putative
PF3D7_1017000
DNA polymerase delta catalytic subunit 2.7.7.7
PF3D7_1012700 NLI interacting factor-like phosphatase, putative 3.1.3.16
PF3D7_1106700 DNA replication ATP-dependent helicase/nuclease dna2, putative 3.6.4.12
PF3D7_1433300
histone-binding protein rbbp7, putative,
PF3D7_1020700 histone acetyltransferase, putative 2.3.1.1
PF3D7_1343900 U4/U6 small nuclear ribonucleoprotein PRP4, putative
PF3D7_0602500 geranylgeranyl transferase type-2 subunit beta, putative 2.5.1.59
PF3D7_1143300 DNA-directed RNA polymerases I and III subunit RPAC1, putative 2.7.7.6
PF3D7_0909800
small nuclear ribonucleoprotein Sm D3, putative
PF3D7_0212300 eukaryotic peptide chain release factor subunit 1, putative; ERF1 3.1.1.29
Online articles related to Cell cycle compartment assocation between P. falciparum cell cycle perturbed transcriptomes retrieved from PubMed

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