|
ATP-dependent chromatin remodeling complexes |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Adapted from Clapier CR, Cairns BR. The biology of chromatin remodeling complexes. Annu Rev Biochem. 2009;78:273-304. Review. PubMed PMID: 19355820. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Family |
Component |
PfID |
|
|
Annotation |
E.C |
Transcript |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4017 |
SWI/SNF |
|
PF3D7_0818700 |
|
|
DNA helicase, putative |
3.6.4.12 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4009 |
|
PF3D7_0611400 |
 |
|
swi/snf-related matrix-associated actin-dependent regulator of chromatin |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4023 |
|
PF3D7_1104200 |
|
|
chromatin remodeling protein |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4030 |
|
PF3D7_1343400 |
|
|
DNA repair protein RAD5, putative |
3.6.4.12 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4031 |
|
PF3D7_1357500 |
|
|
DNA helicase, putative |
3.6.4.12 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4023 |
ISWI |
|
PF3D7_1104200 |
|
|
chromatin remodeling protein |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4020 |
CHD |
Chd1 |
PF3D7_1023900 |
|
|
SNF2 helicase, putative chromodomain-helicase-DNA-binding protein 1 homolog, putative |
3.6.4.12 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4018 |
INO80 |
Ino80 |
PF3D7_0820000 |
|
 |
helicase SRCAP, putative Snf2-related CBP activator, putative |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4024 |
Arp5 |
PF3D7_1110700 |
|
|
actin-like protein, putative |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4035 |
Arp4 |
PF3D7_1422800 |
|
|
actin-related protein ARP4 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 36867 |
|
PF3D7_0103800 |
|
|
actin-related protein arp1, putative |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 14382 |
Actin1 |
PF3D7_1246200 |
|
|
actin I |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 23772 |
|
PF3D7_0807000 |
|
|
YEATS domain-containing protein, putative |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 23723 |
Swc4 |
PF3D7_0628600 |
|
|
DNA methyltransferase 1-associated protein 1, putative |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4036 |
Swc2 |
PF3D7_1464000 |
|
|
YL1 nuclear protein, putative |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4037 |
Bdf1 |
PF3D7_1475600 |
|
|
bromodomain protein 4, putative, bdp4 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Other components |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4008 |
|
ARID |
PF3D7_0603600 |
|
|
at-rich interactive domain-containing protein, putative |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4029 |
|
SANT and SWIRM domains |
PF3D7_1225200 |
|
|
DNA-binding protein, putative |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 27660 |
|
DBP |
PF3D7_0105900 |
|
|
3'-5' exonuclease, putative |
3.1.11.1 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4007 |
|
XAP5 |
PF3D7_0530600 |
|
|
XAP-5 DNA binding protein, putative |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4010 |
|
Plant homeodomain (PHD) |
PF3D7_0624600 |
|
|
iswi chromatin-remodeling complex atpase |
3.6.4.12 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 20795 |
|
PHD |
PF3D7_1141800 |
|
|
EELM2 domain-containing protein, putative |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4019 |
|
BPTF |
PF3D7_0823300 |
|
|
histone acetyltransferase GCN5 |
2.3.1.48 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4021 |
|
ACF1 |
PF3D7_1033700 |
|
|
bromodomain protein 2 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4016 |
|
HMGI |
PF3D7_0817900 |
|
|
high mobility group protein B2 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4028 |
|
PF3D7_1202900 |
|
|
high mobility group protein B1 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4032 |
|
PF3D7_1359200 |
|
|
high mobility group protein B4, putative |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 27499 |
|
|
PF3D7_0629600 |
|
|
Ribosomal RNA-processing protein 7 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4005 |
|
NURF |
PF3D7_0509100 |
|
|
structural maintenance of chromosomes protein 4 |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4033 |
|
Actin ARP |
PF3D7_1412500 |
|
|
actin II |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 14382 |
|
PF3D7_1246200 |
|
|
actin I |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4027 |
|
Histone fold |
PF3D7_1146600 |
|
|
ooocyst rupture protein 1, putative |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4004 |
|
AAA ATPase |
PF3D7_0407900 |
|
|
AAA family ATPase, putative |
3.6.4.3 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4012 |
|
PF3D7_0707400 |
|
|
AAA family ATPase, putative |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4013 |
|
PF3D7_0803500 |
|
|
AAA family ATPase, putative |
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4014 |
|
PF3D7_0806000 |
|
|
AAA family ATPase, putative |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 23012 |
|
PF3D7_1139500 |
|
|
AAA family ATPase, putative |
3.4.21.92 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4034 |
|
PF3D7_1412700 |
|
|
AAA family ATPase, putative |
3.6.1.3 |
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|