Single Gene/enzyme deletions predicted to cause impairment of metabolic networks
Green cells: Single gene enzyme deletions predicted to cause impairment of metabolic network of P. falciparum. Tymoshenko S, Oppenheim RD, Soldati-Favre D, Hatzimanikatis V. Functional genomics of Plasmodium falciparum using metabolic modelling and analysis. Brief Funct Genomics. 2013 12(4):316-27.  PubMed PMID: 23793264
Yellow cells: Plata G, Hsiao TL, Olszewski KL, Llinás M, Vitkup D. Reconstruction and flux-balance analysis of the Plasmodium falciparum metabolic network. Mol Syst Biol. 2010 6:408. PMID: 20823846
Pink cells: Yeh I, Hanekamp T, Tsoka S, Karp PD, Altman RB. Computational analysis of Plasmodium falciparum metabolism: organizing genomic information to facilitate drug discovery. Genome Res. 2004 14(5):917-24. PMID: 15078855
Light blue cells: Fatumo S, Plaimas K, Adebiyi E, König R. Comparing metabolic network models based on genomic and automatically inferred enzyme information from Plasmodium and its human host to define drug targets in silico. Infect Genet Evol. 2011 11(1):201-8. PMID: 20804860
Brown cells: Ludin P, Woodcroft B, Ralph SA, Mäser P. In silico prediction of antimalarial drug target candidates. Int J Parasitol Drugs Drug Resist. 2012 2:191-9. PMID: 24533280;
White cells; Redundant entries in 2 or more DBs.
Functional category PfID Annotation EC# Transcript Literature
Amino acid metabolism PF3D7_1344800
aspartate carbamoyltransferase 2.1.3.2
27380369
PF3D7_0922200
S-adenosylmethionine synthetase 2.5.1.6
No evidence
PF3D7_0204500
aspartate transaminase 2.6.1.1
No evidence
PF3D7_0520900
S-adenosyl-L-homocysteine hydrolase adenosylhomocysteinase 3.3.1.1
12910461 10780361
PF3D7_1033100
S-adenosylmethionine decarboxylase/ornithine decarboxylase 4.1.1.17
6435607 15980361
PF3D7_1435300
glutamate synthase [NADH], putative 1.4.1.14
14284729 11007319 17287350 19513195 11704268
PF3D7_1033100
S-adenosylmethionine decarboxylase/ornithine decarboxylase 4.1.1.17
15980361 18455248
PF3D7_0802000
glutamate dehydrogenase, putative 1.4.1.2
18044977 19531491 10402763
PF3D7_0906500
arginase 3.5.3.1
19218089
PF3D7_1313200
methionyl-tRNA formyltransferase, putative 2.1.2.9
8112305
PF3D7_0405700
lysine decarboxylase, putative 4.1.1.18
1799949 10427692
Carbohydrate metabolism PF3D7_1324900
L-lactate dehydrogenase 1.1.1.27
16098967 10952267
PF3D7_1454700
6-phosphogluconate dehydrogenase, decarboxylating, putative 1.1.1.44
No evidence
PF3D7_1462800
glyceraldehyde-3-phosphate dehydrogenase 1.2.1.12
No evidence
PF3D7_0610800
transketolase 2.2.1.1
No evidence
PF3D7_0624000
hexokinase 2.7.1.1
No evidence
PF3D7_0922500
phosphoglycerate kinase 2.7.2.3
No evidence
PF3D7_1327800 ribose-phosphate pyrophosphokinase, putative 2.7.6.1
No evidence
PF3D7_1453800
glucose-6-phosphate dehydrogenase-6-phosphogluconolactonase 1.1.1.49
16689939 22813531
PF3D7_1444800
fructose-bisphosphate aldolase 4.1.2.13
10477179
PF3D7_1015900
enolase 4.2.1.11
21949403
PF3D7_1342800
phosphoenolpyruvate carboxykinase 4.1.1.49
10779599
PF3D7_1426700
phosphoenolpyruvate carboxylase 4.1.1.31
8704306 4621631 16666689
PF3D7_0604700
glyoxalase I-like protein gilp 8304987 22607473
PF3D7_1219900
ribulose-phosphate 3-epimerase, putative 5.1.3.1
No evidence
PF3D7_1439900
triosephosphate isomerase 5.3.1.1
8552672
PF3D7_1436000 glucose-6-phosphate isomerase 5.3.1.9
No evidence
PF3D7_1012500 phosphoglucomutase, putative 5.4.2.2
No evidence
PF3D7_1252200
chitinase 3.2.1.14
11349074
PF3D7_1325200
lactate dehydrogenase 1.1.1.27
17920591
PF3D7_1113700
glyoxalase I 4.4.1.5
8304987
PF3D7_0919600
added_product=dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit wbp1, putative 2.4.1.119 No evidence
PF3D7_1205700
targeted glyoxalase II 3.1.2.6
16159313
PF3D7_1021600
deoxyribose-phosphate aldolase, putative 4.1.2.4
No evidence
PF3D7_0801800
mannose-6-phosphate isomerase, putative 5.3.1.8
7794901 11697049 19783448
Nucleotide metabolism PF3D7_0920800
inosine-5'-monophosphate dehydrogenase 1.1.1.205
7047569 3515174
PF3D7_0513300
purine nucleoside phosphorylase 2.4.2.1
22096507 11706018
PF3D7_0512700
orotate phosphoribosyltransferase 2.4.2.10
15003844 7909690
PF3D7_1012400
hypoxanthine-guanine phosphoribosyltransferase 2.4.2.8
8366890 10360365
PF3D7_0928900
guanylate kinase 2.7.4.8
No evidence
PF3D7_1251300
thymidylate kinase 2.7.4.9 No evidence
multiple genes 18452584
PF3D7_1029600
adenosine deaminase 3.5.4.4
19728741 17488013
PF3D7_1023200
orotidine 5'-phosphate decarboxylase 4.1.1.23
15683248 18336344
PF3D7_1140000
carbonic anhydrase 4.2.1.1
15499996
PF3D7_0206700
adenylosuccinate lyase 4.3.2.2
19111634
PF3D7_1410200
CTP synthase 6.3.4.2
No evidence
PF3D7_1012600
GMP synthase [glutamine-hydrolyzing] 6.3.5.2
10631077
PF3D7_1308200
carbamoyl phosphate synthetase 6.3.5.5
9202005
PF3D7_1360500 guanylyl cyclase beta 4.6.1.2
17030505
PF3D7_0603300
dihydroorotate dehydrogenase 1.3.5.2
19640844
PF3D7_1015800
ribonucleoside-diphosphate reductase small chain, putative 1.17.4.1
8265664
PF3D7_1405600
ribonucleoside-diphosphate reductase small chain, putative 1.17.4.1
8265664
PF3D7_1437200
ribonucleoside-diphosphate reductase large subunit, putative 1.17.4.1
8265664
PF3D7_1140000
carbonic anhydrase 4.2.1.1
18805693
PF3D7_1354500
adenylosuccinate synthetase 6.3.4.4
15500910
Lipid metabolism PF3D7_1467300
1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267
17568945 10477522 9770490 12499205 20018214
PF3D7_1022800
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), putative 1.17.7.1
No evidence
PF3D7_0615100
enoyl-acyl carrier reductase 1.3.1.9
19068099 19064257
PF3D7_1236800
protein-s-isoprenylcysteine o-methyltransferase 2.1.1.100
No evidence
PF3D7_1343000
phosphoethanolamine N-methyltransferase 2.1.1.103
18694927
PF3D7_1337200
1-deoxy-D-xylulose 5-phosphate synthase 2.2.1.7
15452112 17568945
PF3D7_1212500
glycerol-3-phosphate 1-O-acyltransferase 2.3.1.15
16127032 14668349
PF3D7_0508200
longevity-assurance (LAG1) protein, putative 2.3.1.24
11166384
PF3D7_0211400
beta-ketoacyl-ACP synthase III oxoacyl-ACP synthase FABH 2.3.1.180
19191586 19068099
PF3D7_1415700
serine palmitoyltransferase, putative 2.3.1.50
11166384
PF3D7_1128400
geranylgeranyl pyrophosphate synthase, putative 2.5.1.29
21084289
PF3D7_0810800
hydroxymethyldihydropterin pyrophosphokinase-dihydropteroate synthase 2.5.1.15
9391132 2024960
PF3D7_1129000
spermidine synthase 2.5.1.16
20385001 15913804
PF3D7_0602500 geranylgeranyl transferase type-2 subunit beta, putative 2.5.1.59
18686940
PF3D7_0503100
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, putative 2.7.1.148
No evidence
PF3D7_1401800
choline kinase 2.7.1.32
17145794
PF3D7_1316600
CTP:phosphocholine cytidylyltransferase 2.7.7.15
No evidence
PF3D7_1409900
cytidine diphosphate-diacylglycerol synthase 2.7.7.41
No evidence
PF3D7_0106900
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, putative 2.7.7.60
No evidence
PF3D7_0628300
choline/ethanolaminephosphotransferase, putative 2.7.8.1
No evidence
PF3D7_1315600
CDP-diacylglycerol--inositol 3-phosphatidyltransferase phosphatidylinositol synthase 2.7.8.11 No evidence
PF3D7_0625100
sphingomyelin synthase 2, putative 2.7.8.27
7568097
PF3D7_0625000
sphingomyelin synthase 1, putative 2.7.8.27
11166384
PF3D7_0924000
patatin-like phospholipase, putative 3.1.1.4
No evidence
multiple genes 8022653
PF3D7_0802500 inositol 5-phosphatase, putative 3.1.3.36
8240417
PF3D7_0110600
phosphatidylinositol-4-phosphate 5-kinase 2.7.1.68
15741172 14668349
PF3D7_0705500
inositol-phosphate phosphatase, putative 3.1.3.25
No evidence
PF3D7_1427100
lipase, putative 3.1.1.32
No evidence
PF3D7_1238600
sphingomyelin phosphodiesterase 3.1.4.12
19088422 11781362
PF3D7_0624700
N-acetylglucosaminylphosphatidylinositol deacetylase, putative 3.5.1.89
No evidence
PF3D7_1323000
beta-hydroxyacyl-ACP dehydratase 4.2.1.59
12930838 19068099
PF3D7_0209300
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4.6.1.12
16392111
PF3D7_1026900
biotin-protein ligase 1 6.4.1.2
12499205
PF3D7_0626300
3-oxoacyl-acyl-carrier protein synthase I/II 2.3.1.41
19068099
PF3D7_1404600
Adenylyl cyclase Aca 4.6.1.1
18389080
PF3D7_0629300 phospholipase, putative phosphatidylcholine-sterol acyltransferase, putative 2.3.1.43
15590623
PF3D7_0615100
enoyl-acyl carrier reductase 1.3.1.9
11175846
PF3D7_1147500
protein farnesyltransferase subunit beta 2.5.1.58
12194969
PF3D7_1017200
enoyl-CoA hydratase-related protein, putative 4.2.1.17
No evidence
PF3D7_1323000
beta-hydroxyacyl-ACP dehydratase 4.2.1.59
17804795
PF3D7_0215300
acyl-CoA synthetase 6.2.1.3
11724382
PF3D7_1479000
acyl-CoA synthetase 6.2.1.3
11724382
PF3D7_0104400
4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1.17.1.2
17638523
Cofactor synthesis PF3D7_1116200
pyridoxine biosynthesis protein PDX2 1.4.3.5
No evidence
PF3D7_0206300
pentafunctional AROM polypeptide, putative, pseudogene 1.1.1.25
No evidence
PF3D7_0623000
chorismate synthase 4.2.3.5
11814579
PF3D7_1312600
2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial, putative 1.2.4.4
No evidence
PF3D7_1142400
coproporphyrinogen-III oxidase HemF 1.3.3.3
No evidence
PF3D7_1028100
protoporphyrinogen oxidase 1.3.3.4
20603160 17060533
PF3D7_0417200
bifunctional dihydrofolate reductase-thymidylate synthase 1.5.1.3
10722510 16940112
PF3D7_0630700 bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, putative 1.5.1.5
16940112
PF3D7_0417200
bifunctional dihydrofolate reductase-thymidylate synthase 1.5.1.3
10722510 16127035
PF3D7_0724300 3-demethylubiquinone-9 3-methyltransferase, putative 2.1.1.64
No evidence
PF3D7_1456100
serine hydroxymethyltransferase 2.1.2.1
No evidence
PF3D7_1246100
delta-aminolevulinic acid synthetase 2.3.1.37
1356337 12119044
PF3D7_0629100
nicotinate phosphoribosyltransferase, putative 6.3.4.21
No evidence
PF3D7_0206400 pentafunctional AROM polypeptide, putative, pseudogene
9655396
PF3D7_0922400
para-aminobenzoic acid synthetase 2.6.1.85
No evidence
PF3D7_0913300 conserved Plasmodium protein, unknown function 2.7.1.23 No evidence
PF3D7_1443700
dephospho-CoA kinase 2.7.1.24
No evidence
PF3D7_1037100
pyruvate kinase 2, pyrkii 2.7.1.40
No evidence
PF3D7_0924300
thiamine pyrophosphokinase 2.7.6.2
No evidence
PF3D7_1327600
nicotinamide/nicotinic acid mononucleotide adenylyltransferase 2.7.7.18 20823846
PF3D7_1359100 riboflavin kinase, putative 2.7.1.26 No evidence
PF3D7_0815300
FAD-dependent monooxygenase, putative 1.14.13.8
No evidence
PF3D7_0704700
phosphopantetheine adenylyltransferase, putative 2.7.7.3
No evidence
PF3D7_1472900
dihydroorotase, putative 3.5.2.3
1348618 9425362
PF3D7_0607500
4-hydroxybenzoate polyprenyltransferase, putative 2.5.1.39
No evidence
PF3D7_0816100 phosphopantothenoylcysteine decarboxylase, putative 4.1.1.36
No evidence
PF3D7_0607300
uroporphyrinogen III decarboxylase 4.1.1.37
No evidence
ORPHAN No evidence
PF3D7_1440300
delta-aminolevulinic acid dehydratase porphobilinogen synthase, HemB 4.2.1.24
10932227 17060533
multiple genes No evidence
PF3D7_1324800
dihydrofolate synthase/folylpolyglutamate synthase 6.3.2.12
11223131
PF3D7_1324800
dihydrofolate synthase/folylpolyglutamate synthase 6.3.2.12
11223131 20350571
PF3D7_0926700
glutamine-dependent NAD(+) synthetase, putative 6.3.5.1
No evidence
PF3D7_1420600
pantothenate kinase 1 2.7.1.33
16251308
PF3D7_1437400
pantothenate kinase 2 2.7.1.33
16251308
PF3D7_0629100
nicotinate phosphoribosyltransferase, putative 6.3.4.21
17604275 10677377 3278712
PF3D7_0607500
4-hydroxybenzoate polyprenyltransferase, putative 2.5.1.39
No evidence
PF3D7_0616000
pyridoxal kinase 2.7.1.35
2387668 12387854 12972411
PF3D7_1239600
hydroxyethylthiazole kinase 2.7.1.50
No evidence
PF3D7_0520500
phosphomethylpyrimidine kinase, putative 2.7.1.49
No evidence
PF3D7_1015000
FAD synthetase, putative 2.7.7.2
No evidence
PF3D7_0320500
nicotinamidase, putative 3.5.1.19
No evidence
PF3D7_0810800
hydroxymethyldihydropterin pyrophosphokinase-dihydropteroate synthase 2.5.1.15
9391132
Redox metabolism PF3D7_1419800
glutathione reductase 1.8.1.7
15537352 19919822 10080390
PF3D7_1419300
glutathione S-transferase 2.5.1.18
14623980 12108547
PF3D7_0918900
gamma-glutamylcysteine synthetase 6.3.2.2
10677377 12225291
PF3D7_0923800
thioredoxin reductase 1.8.1.9
12004069 12646219
PF3D7_1438900
thioredoxin peroxidase 1 1.11.1.15
16597467 18417228
PF3D7_0717900
thioredoxin-like protein
No evidence
Nucleic acid metabolism multiple genes 22607140 22508312
PF3D7_1437200
ribonucleoside-diphosphate reductase large subunit, putative 1.17.4.1
21791713 8265664
multiple genes No evidence
PF3D7_0510500
topoisomerase I 5.99.1.2
9515582
PF3D7_0510500
topoisomerase I 5.99.1.2
10725690 8182707
PF3D7_1365600
DNA topoisomerase 6 subunit b, putative
No evidence
PF3D7_1314200
telomerase reverse transcriptase 2.7.7.49
11880232
PF3D7_1332600
DNA-(apurinic or apyrimidinic site) lyase 1 4.2.99.18
No evidence
PF3D7_1362500
3'-5' exonuclease, putative 3.1.-.-
No evidence
PF3D7_0513600
deoxyribodipyrimidine photo-lyase, putative 4.1.99.3
No evidence
Transcription PF3D7_1349400 cytidine and deoxycytidylate deaminase, putative 3.5.4.5
No evidence
PF3D7_1429400
rRNA (adenosine-2'-O-)-methyltransferase, putative 2.1.1.-
16153833 19171150
PF3D7_1308900
mRNA-decapping enzyme 2, putative
12697025 19210543 19603790
PF3D7_0807100
parasite specific helicase 3 3.6.4.13
No evidence
PF3D7_0322100
mRNA-capping enzyme subunit beta 3.1.3.33
No evidence
Translation PF3D7_1218600
arginine-tRNA ligase; arginyl-tRNA synthetase 6.1.1.19
14692504
PF3D7_1126000
threonine--tRNA ligase 6.1.1.3
No evidence
PF3D7_1367700
alanine--tRNA ligase 6.1.1.7
No evidence
PF3D7_0627800
acetyl-CoA synthetase 6.2.1.1
No evidence
Protein traffic PF3D7_0920500
ADP-ribosylation factor, putative
17332279
Post translational modifications PF3D7_1412600
deoxyhypusine synthase 2.5.1.46
18256853
multiple genes 22607140 22508312
PF3D7_1122800
calcium-dependent protein kinase 6 2.7.11.13
No evidence
PF3D7_1123100
calcium-dependent protein kinase 7 2.7.11.17
No evidence
PF3D7_1349300
tyrosine kinase-like protein 2.7.10.2
20582613
PF3D7_1331000 protein kinase, putative
No evidence
PF3D7_0704500 serine/threonine protein kinase, putative 2.7.11.1
No evidence
PF3D7_0713400
GPCR-like receptor sr25; serpentine receptor SR25 No evidence
PF3D7_1414500
atypical protein kinase, ABC-1 family, putative 1.14.13.-
No evidence
PF3D7_1464600
serine/threonine protein phosphatase uis2, putative 3.1.3.16
No evidence
Organellar functions PF3D7_1439400
cytochrome b-c1 complex subunit Rieske, putative 1.10.2.2
22566611
PF3D7_0603300
dihydroorotate dehydrogenase 1.3.5.2
15795226 19640844 21517059 17330044
PF3D7_0915000
type II NADH:ubiquinone oxidoreductase 1.6.5.3
16641458 14561763
multiple genes No evidence
PF3D7_1364900
ferrochelatase, HemH 4.99.1.1
No evidence
PF3D7_0611100 succinate dehydrogenase subunit 3, putative 1.3.5.1 10693744
PF3D7_1010300
succinate dehydrogenase subunit 4, putative 1.3.5.1
10693744
PF3D7_0927300
fumarate hydratase 4.2.1.2
8203917 9822627 21209090
Transport PF3D7_0609100
zinc transporter zip1, putative No evidence
PF3D7_0530200
phosphoenolpyruvate/phosphate translocator, PPT
23041242
PF3D7_0508300
triose phosphate transporter, TPT
23041242
PF3D7_1340900
sodium-dependent phosphate transporter, PiT
17006451
PF3D7_0520600
bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] Ap4A hydrolase 3.6.1.17
No evidence
PF3D7_1104800 metabolite/drug transporter, putative 17006451
PF3D7_1132800
aquaglyceroporin
17284593
PF3D7_1107900
mechanosensitive ion channel protein
No evidence
PF3D7_1303500
sodium/hydrogen exchanger, Na+, H+ antiporter NHE
9442109
PF3D7_0916000
major facilitator superfamily domain-containing protein, MFS2
No evidence
Online articles related to Single Gene/enzyme deletions predicted to cause impairment of metabolic networks retrieved from PubMed