Single Gene/enzyme deletions predicted to cause impairment of metabolic networks
Green cells: Single gene enzyme deletions predicted to cause impairment of metabolic network of P. falciparum. Tymoshenko S, Oppenheim RD, Soldati-Favre D, Hatzimanikatis V. Functional genomics of Plasmodium falciparum using metabolic modelling and analysis. Brief Funct Genomics. 2013 12(4):316-27.  PubMed PMID: 23793264
Yellow cells: Plata G, Hsiao TL, Olszewski KL, Llinás M, Vitkup D. Reconstruction and flux-balance analysis of the Plasmodium falciparum metabolic network. Mol Syst Biol. 2010 6:408. PMID: 20823846
Pink cells: Yeh I, Hanekamp T, Tsoka S, Karp PD, Altman RB. Computational analysis of Plasmodium falciparum metabolism: organizing genomic information to facilitate drug discovery. Genome Res. 2004 14(5):917-24. PMID: 15078855
Light blue cells: Fatumo S, Plaimas K, Adebiyi E, König R. Comparing metabolic network models based on genomic and automatically inferred enzyme information from Plasmodium and its human host to define drug targets in silico. Infect Genet Evol. 2011 11(1):201-8. PMID: 20804860
Brown cells: Ludin P, Woodcroft B, Ralph SA, Mäser P. In silico prediction of antimalarial drug target candidates. Int J Parasitol Drugs Drug Resist. 2012 2:191-9. PMID: 24533280;
White cells; Redundant entries in 2 or more DBs.
Functional category PfID Annotation EC# Transcript Literature
26726 Amino acid metabolism PF3D7_1344800
aspartate carbamoyltransferase 2.1.3.2
27380369
26659 PF3D7_0922200
S-adenosylmethionine synthetase 2.5.1.6
No evidence
26598 PF3D7_0204500
aspartate transaminase 2.6.1.1
No evidence
26616 PF3D7_0520900
S-adenosyl-L-homocysteine hydrolase adenosylhomocysteinase 3.3.1.1
12910461 10780361
26682 PF3D7_1033100
S-adenosylmethionine decarboxylase/ornithine decarboxylase 4.1.1.17
6435607 15980361
34033 PF3D7_1435300
glutamate synthase [NADH], putative 1.4.1.14
14284729 11007319 17287350 19513195 11704268
26682 PF3D7_1033100
S-adenosylmethionine decarboxylase/ornithine decarboxylase 4.1.1.17
15980361 18455248
26645 PF3D7_0802000
glutamate dehydrogenase, putative 1.4.1.2
18044977 19531491 10402763
26651 PF3D7_0906500
arginase 3.5.3.1
19218089
26711 PF3D7_1313200
methionyl-tRNA formyltransferase, putative 2.1.2.9
8112305
26605 PF3D7_0405700
lysine decarboxylase, putative 4.1.1.18
1799949 10427692
26717 Carbohydrate metabolism PF3D7_1324900
L-lactate dehydrogenase 1.1.1.27
16098967 10952267
26759 PF3D7_1454700
6-phosphogluconate dehydrogenase, decarboxylating, putative 1.1.1.44
No evidence
26761 PF3D7_1462800
glyceraldehyde-3-phosphate dehydrogenase 1.2.1.12
No evidence
26624 PF3D7_0610800
transketolase 2.2.1.1
No evidence
26628 PF3D7_0624000
hexokinase 2.7.1.1
No evidence
26661 PF3D7_0922500
phosphoglycerate kinase 2.7.2.3
No evidence
26719 PF3D7_1327800 ribose-phosphate pyrophosphokinase, putative 2.7.6.1
No evidence
26758 PF3D7_1453800
glucose-6-phosphate dehydrogenase-6-phosphogluconolactonase 1.1.1.49
16689939 22813531
26757 PF3D7_1444800
fructose-bisphosphate aldolase 4.1.2.13
10477179
26674 PF3D7_1015900
enolase 4.2.1.11
21949403
26724 PF3D7_1342800
phosphoenolpyruvate carboxykinase 4.1.1.49
10779599
26746 PF3D7_1426700
phosphoenolpyruvate carboxylase 4.1.1.31
8704306 4621631 16666689
29739 PF3D7_0604700
glyoxalase I-like protein gilp 8304987 22607473
26700 PF3D7_1219900
ribulose-phosphate 3-epimerase, putative 5.1.3.1
No evidence
26754 PF3D7_1439900
triosephosphate isomerase 5.3.1.1
8552672
26750 PF3D7_1436000 glucose-6-phosphate isomerase 5.3.1.9
No evidence
26670 PF3D7_1012500 phosphoglucomutase, putative 5.4.2.2
No evidence
26706 PF3D7_1252200
chitinase 3.2.1.14
11349074
26770 PF3D7_1325200
lactate dehydrogenase 1.1.1.27
17920591
26686 PF3D7_1113700
glyoxalase I 4.4.1.5
8304987
26656 PF3D7_0919600
added_product=dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit wbp1, putative 2.4.1.119 No evidence
26697 PF3D7_1205700
targeted glyoxalase II 3.1.2.6
16159313
26676 PF3D7_1021600
deoxyribose-phosphate aldolase, putative 4.1.2.4
No evidence
26644 PF3D7_0801800
mannose-6-phosphate isomerase, putative 5.3.1.8
7794901 11697049 19783448
26658 Nucleotide metabolism PF3D7_0920800
inosine-5'-monophosphate dehydrogenase 1.1.1.205
7047569 3515174
26612 PF3D7_0513300
purine nucleoside phosphorylase 2.4.2.1
22096507 11706018
26611 PF3D7_0512700
orotate phosphoribosyltransferase 2.4.2.10
15003844 7909690
26669 PF3D7_1012400
hypoxanthine-guanine phosphoribosyltransferase 2.4.2.8
8366890 10360365
26667 PF3D7_0928900
guanylate kinase 2.7.4.8
No evidence
26705 PF3D7_1251300
thymidylate kinase 2.7.4.9 No evidence
multiple genes 18452584
26681 PF3D7_1029600
adenosine deaminase 3.5.4.4
19728741 17488013
26678 PF3D7_1023200
orotidine 5'-phosphate decarboxylase 4.1.1.23
15683248 18336344
26694 PF3D7_1140000
carbonic anhydrase 4.2.1.1
15499996
26600 PF3D7_0206700
adenylosuccinate lyase 4.3.2.2
19111634
26740 PF3D7_1410200
CTP synthase 6.3.4.2
No evidence
26671 PF3D7_1012600
GMP synthase [glutamine-hydrolyzing] 6.3.5.2
10631077
26708 PF3D7_1308200
carbamoyl phosphate synthetase 6.3.5.5
9202005
26731 PF3D7_1360500 guanylyl cyclase beta 4.6.1.2
17030505
26619 PF3D7_0603300
dihydroorotate dehydrogenase 1.3.5.2
19640844
26673 PF3D7_1015800
ribonucleoside-diphosphate reductase small chain, putative 1.17.4.1
8265664
26738 PF3D7_1405600
ribonucleoside-diphosphate reductase small chain, putative 1.17.4.1
8265664
26751 PF3D7_1437200
ribonucleoside-diphosphate reductase large subunit, putative 1.17.4.1
8265664
26694 PF3D7_1140000
carbonic anhydrase 4.2.1.1
18805693
26729 PF3D7_1354500
adenylosuccinate synthetase 6.3.4.4
15500910
26763 Lipid metabolism PF3D7_1467300
1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267
17568945 10477522 9770490 12499205 20018214
26677 PF3D7_1022800
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), putative 1.17.7.1
No evidence
26774 PF3D7_0615100
enoyl-acyl carrier reductase 1.3.1.9
19068099 19064257
26701 PF3D7_1236800
protein-s-isoprenylcysteine o-methyltransferase 2.1.1.100
No evidence
26725 PF3D7_1343000
phosphoethanolamine N-methyltransferase 2.1.1.103
18694927
26722 PF3D7_1337200
1-deoxy-D-xylulose 5-phosphate synthase 2.2.1.7
15452112 17568945
26698 PF3D7_1212500
glycerol-3-phosphate 1-O-acyltransferase 2.3.1.15
16127032 14668349
26608 PF3D7_0508200
longevity-assurance (LAG1) protein, putative 2.3.1.24
11166384
26602 PF3D7_0211400
beta-ketoacyl-ACP synthase III oxoacyl-ACP synthase FABH 2.3.1.180
19191586 19068099
27611 PF3D7_1415700
serine palmitoyltransferase, putative 2.3.1.50
11166384
26691 PF3D7_1128400
geranylgeranyl pyrophosphate synthase, putative 2.5.1.29
21084289
26648 PF3D7_0810800
hydroxymethyldihydropterin pyrophosphokinase-dihydropteroate synthase 2.5.1.15
9391132 2024960
26692 PF3D7_1129000
spermidine synthase 2.5.1.16
20385001 15913804
29865 PF3D7_0602500 geranylgeranyl transferase type-2 subunit beta, putative 2.5.1.59
18686940
26607 PF3D7_0503100
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, putative 2.7.1.148
No evidence
26736 PF3D7_1401800
choline kinase 2.7.1.32
17145794
33974 PF3D7_1316600
CTP:phosphocholine cytidylyltransferase 2.7.7.15
No evidence
26739 PF3D7_1409900
cytidine diphosphate-diacylglycerol synthase 2.7.7.41
No evidence
26596 PF3D7_0106900
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, putative 2.7.7.60
No evidence
26634 PF3D7_0628300
choline/ethanolaminephosphotransferase, putative 2.7.8.1
No evidence
26713 PF3D7_1315600
CDP-diacylglycerol--inositol 3-phosphatidyltransferase phosphatidylinositol synthase 2.7.8.11 No evidence
26631 PF3D7_0625100
sphingomyelin synthase 2, putative 2.7.8.27
7568097
26630 PF3D7_0625000
sphingomyelin synthase 1, putative 2.7.8.27
11166384
26663 PF3D7_0924000
patatin-like phospholipase, putative 3.1.1.4
No evidence
multiple genes 8022653
26646 PF3D7_0802500 inositol 5-phosphatase, putative 3.1.3.36
8240417
26597 PF3D7_0110600
phosphatidylinositol-4-phosphate 5-kinase 2.7.1.68
15741172 14668349
26640 PF3D7_0705500
inositol-phosphate phosphatase, putative 3.1.3.25
No evidence
26747 PF3D7_1427100
lipase, putative 3.1.1.32
No evidence
26702 PF3D7_1238600
sphingomyelin phosphodiesterase 3.1.4.12
19088422 11781362
26629 PF3D7_0624700
N-acetylglucosaminylphosphatidylinositol deacetylase, putative 3.5.1.89
No evidence
26715 PF3D7_1323000
beta-hydroxyacyl-ACP dehydratase 4.2.1.59
12930838 19068099
26601 PF3D7_0209300
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4.6.1.12
16392111
26679 PF3D7_1026900
biotin-protein ligase 1 6.4.1.2
12499205
26632 PF3D7_0626300
3-oxoacyl-acyl-carrier protein synthase I/II 2.3.1.41
19068099
26737 PF3D7_1404600
Adenylyl cyclase Aca 4.6.1.1
18389080
26636 PF3D7_0629300 phospholipase, putative phosphatidylcholine-sterol acyltransferase, putative 2.3.1.43
15590623
26774 PF3D7_0615100
enoyl-acyl carrier reductase 1.3.1.9
11175846
26696 PF3D7_1147500
protein farnesyltransferase subunit beta 2.5.1.58
12194969
26675 PF3D7_1017200
enoyl-CoA hydratase-related protein, putative 4.2.1.17
No evidence
26715 PF3D7_1323000
beta-hydroxyacyl-ACP dehydratase 4.2.1.59
17804795
PF3D7_0215300
acyl-CoA synthetase 6.2.1.3
11724382
26775 PF3D7_1479000
acyl-CoA synthetase 6.2.1.3
11724382
26595 PF3D7_0104400
4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1.17.1.2
17638523
26687 Cofactor synthesis PF3D7_1116200
pyridoxine biosynthesis protein PDX2 1.4.3.5
No evidence
26599 PF3D7_0206300
pentafunctional AROM polypeptide, putative, pseudogene 1.1.1.25
No evidence
26627 PF3D7_0623000
chorismate synthase 4.2.3.5
11814579
26710 PF3D7_1312600
2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial, putative 1.2.4.4
No evidence
26695 PF3D7_1142400
coproporphyrinogen-III oxidase HemF 1.3.3.3
No evidence
26680 PF3D7_1028100
protoporphyrinogen oxidase 1.3.3.4
20603160 17060533
26606 PF3D7_0417200
bifunctional dihydrofolate reductase-thymidylate synthase 1.5.1.3
10722510 16940112
26637 PF3D7_0630700 bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, putative 1.5.1.5
16940112
26606 PF3D7_0417200
bifunctional dihydrofolate reductase-thymidylate synthase 1.5.1.3
10722510 16127035
26643 PF3D7_0724300 3-demethylubiquinone-9 3-methyltransferase, putative 2.1.1.64
No evidence
26760 PF3D7_1456100
serine hydroxymethyltransferase 2.1.2.1
No evidence
26704 PF3D7_1246100
delta-aminolevulinic acid synthetase 2.3.1.37
1356337 12119044
26772 PF3D7_0629100
nicotinate phosphoribosyltransferase, putative 6.3.4.21
No evidence
26765 PF3D7_0206400 pentafunctional AROM polypeptide, putative, pseudogene
9655396
26660 PF3D7_0922400
para-aminobenzoic acid synthetase 2.6.1.85
No evidence
26652 PF3D7_0913300 conserved Plasmodium protein, unknown function 2.7.1.23 No evidence
26756 PF3D7_1443700
dephospho-CoA kinase 2.7.1.24
No evidence
26683 PF3D7_1037100
pyruvate kinase 2, pyrkii 2.7.1.40
No evidence
26664 PF3D7_0924300
thiamine pyrophosphokinase 2.7.6.2
No evidence
26718 PF3D7_1327600
nicotinamide/nicotinic acid mononucleotide adenylyltransferase 2.7.7.18 20823846
26730 PF3D7_1359100 riboflavin kinase, putative 2.7.1.26 No evidence
26649 PF3D7_0815300
FAD-dependent monooxygenase, putative 1.14.13.8
No evidence
26639 PF3D7_0704700
phosphopantetheine adenylyltransferase, putative 2.7.7.3
No evidence
26764 PF3D7_1472900
dihydroorotase, putative 3.5.2.3
1348618 9425362
26622 PF3D7_0607500
4-hydroxybenzoate polyprenyltransferase, putative 2.5.1.39
No evidence
26650 PF3D7_0816100 phosphopantothenoylcysteine decarboxylase, putative 4.1.1.36
No evidence
26621 PF3D7_0607300
uroporphyrinogen III decarboxylase 4.1.1.37
No evidence
ORPHAN No evidence
26755 PF3D7_1440300
delta-aminolevulinic acid dehydratase porphobilinogen synthase, HemB 4.2.1.24
10932227 17060533
multiple genes No evidence
26716 PF3D7_1324800
dihydrofolate synthase/folylpolyglutamate synthase 6.3.2.12
11223131
26716 PF3D7_1324800
dihydrofolate synthase/folylpolyglutamate synthase 6.3.2.12
11223131 20350571
26665 PF3D7_0926700
glutamine-dependent NAD(+) synthetase, putative 6.3.5.1
No evidence
PF3D7_1420600
pantothenate kinase 1 2.7.1.33
16251308
26771 PF3D7_1437400
pantothenate kinase 2 2.7.1.33
16251308
26772 PF3D7_0629100
nicotinate phosphoribosyltransferase, putative 6.3.4.21
17604275 10677377 3278712
26622 PF3D7_0607500
4-hydroxybenzoate polyprenyltransferase, putative 2.5.1.39
No evidence
26773 PF3D7_0616000
pyridoxal kinase 2.7.1.35
2387668 12387854 12972411
26703 PF3D7_1239600
hydroxyethylthiazole kinase 2.7.1.50
No evidence
26614 PF3D7_0520500
phosphomethylpyrimidine kinase, putative 2.7.1.49
No evidence
26672 PF3D7_1015000
FAD synthetase, putative 2.7.7.2
No evidence
26603 PF3D7_0320500
nicotinamidase, putative 3.5.1.19
No evidence
26648 PF3D7_0810800
hydroxymethyldihydropterin pyrophosphokinase-dihydropteroate synthase 2.5.1.15
9391132
26745 Redox metabolism PF3D7_1419800
glutathione reductase 1.8.1.7
15537352 19919822 10080390
26744 PF3D7_1419300
glutathione S-transferase 2.5.1.18
14623980 12108547
26655 PF3D7_0918900
gamma-glutamylcysteine synthetase 6.3.2.2
10677377 12225291
26662 PF3D7_0923800
thioredoxin reductase 1.8.1.9
12004069 12646219
26752 PF3D7_1438900
thioredoxin peroxidase 1 1.11.1.15
16597467 18417228
26642 PF3D7_0717900
thioredoxin-like protein
No evidence
Nucleic acid metabolism multiple genes 22607140 22508312
26751 PF3D7_1437200
ribonucleoside-diphosphate reductase large subunit, putative 1.17.4.1
21791713 8265664
multiple genes No evidence
26610 PF3D7_0510500
topoisomerase I 5.99.1.2
9515582
26610 PF3D7_0510500
topoisomerase I 5.99.1.2
10725690 8182707
29758 PF3D7_1365600
DNA topoisomerase 6 subunit b, putative
No evidence
26712 PF3D7_1314200
telomerase reverse transcriptase 2.7.7.49
11880232
29875 PF3D7_1332600
DNA-(apurinic or apyrimidinic site) lyase 1 4.2.99.18
No evidence
26732 PF3D7_1362500
3'-5' exonuclease, putative 3.1.-.-
No evidence
26613 PF3D7_0513600
deoxyribodipyrimidine photo-lyase, putative 4.1.99.3
No evidence
26728 Transcription PF3D7_1349400 cytidine and deoxycytidylate deaminase, putative 3.5.4.5
No evidence
26748 PF3D7_1429400
rRNA (adenosine-2'-O-)-methyltransferase, putative 2.1.1.-
16153833 19171150
26709 PF3D7_1308900 mRNA-decapping enzyme 2, putative
12697025 19210543 19603790
27632 PF3D7_0807100
parasite specific helicase 3 3.6.4.13
No evidence
26604 PF3D7_0322100
mRNA-capping enzyme subunit beta 3.1.3.33
No evidence
26699 Translation PF3D7_1218600
arginine-tRNA ligase; arginyl-tRNA synthetase 6.1.1.19
14692504
26690 PF3D7_1126000
threonine--tRNA ligase 6.1.1.3
No evidence
26735 PF3D7_1367700
alanine--tRNA ligase 6.1.1.7
No evidence
26633 PF3D7_0627800
acetyl-CoA synthetase 6.2.1.1
No evidence
26657 Protein traffic PF3D7_0920500
ADP-ribosylation factor, putative
17332279
26741 Post translational modifications PF3D7_1412600
deoxyhypusine synthase 2.5.1.46
18256853
multiple genes 22607140 22508312
26688 PF3D7_1122800
calcium-dependent protein kinase 6 2.7.11.13
No evidence
26689 PF3D7_1123100
calcium-dependent protein kinase 7 2.7.11.17
No evidence
26727 PF3D7_1349300
tyrosine kinase-like protein 2.7.10.2
20582613
26720 PF3D7_1331000 protein kinase, putative
No evidence
26638 PF3D7_0704500 serine/threonine protein kinase, putative 2.7.11.1
No evidence
27534 PF3D7_0713400
GPCR-like receptor sr25; serpentine receptor SR25 No evidence
26742 PF3D7_1414500
atypical protein kinase, ABC-1 family, putative 1.14.13.-
No evidence
26762 PF3D7_1464600
serine/threonine protein phosphatase uis2, putative 3.1.3.16
No evidence
26753 Organellar functions PF3D7_1439400
cytochrome b-c1 complex subunit Rieske, putative 1.10.2.2
22566611
26619 PF3D7_0603300
dihydroorotate dehydrogenase 1.3.5.2
15795226 19640844 21517059 17330044
26653 PF3D7_0915000
type II NADH:ubiquinone oxidoreductase 1.6.5.3
16641458 14561763
multiple genes No evidence
26733 PF3D7_1364900
ferrochelatase, HemH 4.99.1.1
No evidence
26625 PF3D7_0611100 succinate dehydrogenase subunit 3, putative 1.3.5.1 10693744
26668 PF3D7_1010300
succinate dehydrogenase subunit 4, putative 1.3.5.1
10693744
26666 PF3D7_0927300
fumarate hydratase 4.2.1.2
8203917 9822627 21209090
26623 Transport PF3D7_0609100
zinc transporter zip1, putative No evidence
26617 PF3D7_0530200
phosphoenolpyruvate/phosphate translocator, PPT
23041242
26609 PF3D7_0508300
triose phosphate transporter, TPT
23041242
26723 PF3D7_1340900
sodium-dependent phosphate transporter, PiT
17006451
26615 PF3D7_0520600
bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] Ap4A hydrolase 3.6.1.17
No evidence
26684 PF3D7_1104800 metabolite/drug transporter, putative 17006451
26693 PF3D7_1132800
aquaglyceroporin
17284593
26685 PF3D7_1107900
mechanosensitive ion channel protein
No evidence
26707 PF3D7_1303500
sodium/hydrogen exchanger, Na+, H+ antiporter NHE
9442109
26654 PF3D7_0916000
major facilitator superfamily domain-containing protein, MFS2
No evidence
Online articles related to Single Gene/enzyme deletions predicted to cause impairment of metabolic networks retrieved from PubMed