Nonprotein-coding transcriptome
Raabe CA, Sanchez CP, Randau G, Robeck T, Skryabin BV, Chinni SV, Kube M, Reinhardt R, Ng GH, Manickam R, Kuryshev VY, Lanzer M, Brosius J, Tang TH, Rozhdestvensky TS. A global view of the nonprotein-coding transcriptome in Plasmodium falciparum. Nucleic Acids Res. 2010 Jan;38(2):608-17. PMID: 19864253
Pfa_sno/scaR Subclass Chr # Or. Cord Length (nt) Method Location Lib Pfa-snoRNA cDNAs # Acc_Number
Pfa_snoR_23 C/D 14 - 972721-972801 81 lib. intergenic Pfa-snoR5854 37 GQ282328
14 - 972718-972801 84 comp_ana. intergenic
Pfa_snoR_29 C/D 14 + 981530-981613 84 lib. intergenic Pfa-snoR5774 8 GQ282334
14 + 981529-981614 86 comp_ana. intergenic
Pfa_snoR_30 C/D 14 + 982097-982170 74 lib. intergenic Pfa-snoR5908 21 GQ282335
14 - 982096-982170 75 comp_ana. intergenic
Pfa_snoR_02 C/D 3 - 398155-398240 86 lib. intergenic Pfa-snoR6296 14 GQ282312
3 - 398156-398238 83 comp_ana. intergenic
Pfa_snoR_12 C/D 11 - 395253-395337 85 lib. intergenic Pfa-snoR5629 74 GQ282319
11 - 395252-395336 85 comp_ana. intergenic
Pfa_snoR_16 C/D 13 - 243860-243974 115 lib. intergenic Pfa-snoR6240 96 GQ282321
13 - 243850-243969 120 comp_ana. intergenic
Pfa_snoR_13 C/D 11 + 1166588-1166685 98 lib. intergenic Pfa-U14B 10
11 + 1166586-1166686 101 comp_ana. intergenic
Pfa_snoR_U14a C/D 11 + 1166811-1166909 99 lib. intergenic Pfa-U14A 20 GQ282353
nd. comp_ana. nd.
Pfa_snoR_24 C/D 14 - 973090-973167 78 lib. intergenic Pfa-snoR5907 26 GQ282329
14 - 973088-973167 80 comp_ana. intergenic
Pfa_snoR_07 C/D 11 - 381173-381259 87 lib. intergenic Pfa-snoR6303 14 GQ282316
11 - 381171-381258 88 comp_ana. intergenic
Pfa_snoR_27 H/ACA 14 + 979406-979546 141 lib. intergenic Pfa-snoR6372 12 GQ282332
14 + 979405-979546 142 comp_ana. intergenic
Pfa_snoR_22 C/D 14 - 92793-92873 81 lib. intronic Pfa-snoR6261 9 GQ282327
14 - 92791-92873 83 comp_ana. intronic
Pfa_snoR_06 C/D 8 + 240177-240259 83 lib. intronic Pfa-snoR5909 13 GQ282315
8 + 240177-240261 85 comp_ana. intronic
Pfa_snoR_09 C/D 11 - 391066-391147 82 lib. intronic Pfa-snoR6039 79 GQ282318
11 - 391065-391147 83 comp_ana. intronic
Pfa_snoR_08 C/D 11 - 390441-390508 68 lib. intronic Pfa-snoR5806 72 GQ282317
11 - 390439-390508 70 comp_ana. intronic
Pfa_snoR_20 C/D 13 + 1637300-1637375 76 lib. intronic Pfa-snoR6270 25 GQ282325
13 + 1637299-1637378 80 comp_ana. intronic
Pfa_snoR_19 C/D 13 - 1479700-1479795 96 lib. intronic Pfa-snoR6422 3 GQ282324
13 - 1479698-1479795 98 comp_ana. intronic
Pfa_snoR_21 C/D 13 + 2049073-2049217 145 lib. intronic Pfa-snoR6259 23 GQ282326
13 + 2049072-2049216 145 comp_ana. intronic
Pfa_snoR_26 C/D 14 + 975187-975332 146 lib. intronic Pfa-snoR6396 3 GQ282331
14 + 975173-975332 160 comp_ana. intronic
Pfa_snoR_25 C/D 14 - 973949-974016 68 lib. intronic Pfa-snoR5906 24 GQ282330
14 - 973947-974016 70 comp_ana. intronic
Pfa_snoR_01 C/D 2 - 767978-768057 80 lib. intergenic Pfa-snoR6264 27 GQ282311
2 - 767976-768057 82 comp_ana. intergenic
Pfa_snoR_04 C/D 5 + 465820-465936 117 lib.
intronic-AS
Pfa-snoR6241 21 GQ282313
5 + 465765-465944 180 comp_ana.
intronic_AS
Pfa_snoR_05 C/D 8 - 1162305-1162402 98 lib. intronic Pfa-snoR5624 42 GQ282314
8 - 1162304-1162401 98 comp_ana. intronic
Pfa_sno/scaR_10 C/D 11 - 391763-391837 75 lib. intronic Pfasno/scaR6091 8 GQ282355
11 - 391761-391837 77 comp_ana. intronic
Pfa_snoR_17 C/D 13 + 1295142-1295218 77 lib. intronic Pfa-snoR5939 4 GQ282322
13 + 1295141-1295220 80 comp_ana. intronic
Pfa_snoR_18 C/D 13 + 1324461-1324539 80 lib. intronic Pfa-snoR6372a 4 GQ282323
13 + 1324456-1324540 85 comp_ana.
Pfa_snoR_28 C/D 14 + 979708-979778 71 lib. intergenic Pfa-snoR6239 107 GQ282333
14 + 979708-979780 73 comp_ana. intergenic
Pfa_snoR_14 C/D 12 - 479485-479526 42 lib. intergenic Pfa-snoR6449 1 Psnotfl GQ282320
12 - 479483-479609 127 comp_ana. intergenic
Pfa_snoR_31 H/ACA 14 + 982874-982960 87 lib. intergenic Pfa-snoR6142 2 Psnotfl GQ282336
14 + 982812-982956 145 comp_ana. Intergenic
Pfa_snoR_32 H/ACA 14 + 982015-982157 143 lib. intergenic Pfa-snoR6310 11 GQ282337
Pfa_snoR_33 H/ACA 14 + 982271-982464 194 lib. intergenic Pfa-snoR7194 3 GQ282338
Ruf_4 14 + 982251-982525 275 comp_ana. intergenic
Pfa_snoR_36 H/ACA 7 + 438841-438897 57 lib. intronic Pfa-snoR6397 3 Psnotfl GQ282343
Pfa_snoR_37 C/D 8 - 237540-237691 152 lib. intergenic Pfa-snoR5779 8 GQ282344
Pfa_snoR_38 C/D 14 - 875118-875266 149 lib. intergenic Pfa-snoR6038 17 GQ282345
Pfa_scaR_39 C/D 14 + 1898210-1898280 71 lib. intergenic Pfa-scaR7013 1 GQ282356
Pfa_snoR_40 H/ACA 8 + 240998-241145 146 lib. intronic Pfa-snoR7002 3 GQ282346
Ruf_3 8 + 240934-241120 187 comp_ana. intronic
Pfa_snoR_41 H/ACA 2 - 767585-767739 155 lib. CDS-hypprotein Pfa-snoR6389 2 GQ282347
Pfa_snoR_42a H/ACA 6 - 74260-74410 151 lib. intergenic Pfa-snoR5588 24 paralog GQ282348
Pfa_snoR_42b1 H/ACA 8 - 65753-65902 150 lib. intergenic Pfa-snoR5765b 1 paralog GQ282349
Pfa_snoR_42b2 H/ACA 1 + 586442-586591 150 lib. intergenic Pfa-snoR5765b 1 paralog GQ282350
Pfa_snoR_43 H/ACA 10 + 895922-895968 47 lib. intronic Pfa-snR6126 2 Psnotfl GQ282351
Pfa_snoR_44 H/ACA 3 - 215995-216084 90 lib. intronic Pfa-snoR6168 4 GQ282352
Pfa_snoR_35 H/ACA 6 + 1080487-1080560 74 lib. intronic Pfa-snoR6444 2 GQ282342
PF3D7_0829900 non-coding rna
PF3D7_0830100 non-coding rna
PF3D7_1148100 non-coding rna
PF3D7_1148200 non-coding rna
PF3D7_1148500 non-coding rna
PF3D7_1229200 non-coding rna
pf3d7_1309120 non-coding rna
pf3d7_1370800 non-coding rna
pf3d7_1370900 non-coding rna
pf3d7_1421700 non-coding rna
pf3d7_1424800 non-coding rna
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