Nonprotein-coding transcriptome | ||||||||||
Raabe CA, Sanchez CP, Randau G, Robeck T, Skryabin BV, Chinni SV, Kube M, Reinhardt R, Ng GH, Manickam R, Kuryshev VY, Lanzer M, Brosius J, Tang TH, Rozhdestvensky TS. A global view of the nonprotein-coding transcriptome in Plasmodium falciparum. Nucleic Acids Res. 2010 Jan;38(2):608-17. PMID: 19864253 | ||||||||||
Pfa_sno/scaR | Subclass | Chr # | Or. Cord | Length (nt) | Method | Location | Lib Pfa-snoRNA | cDNAs # | Acc_Number | |
Pfa_snoR_23 | C/D | 14 | - | 972721-972801 | 81 | lib. | intergenic | Pfa-snoR5854 | 37 | GQ282328 |
14 | - | 972718-972801 | 84 | comp_ana. | intergenic | |||||
Pfa_snoR_29 | C/D | 14 | + | 981530-981613 | 84 | lib. | intergenic | Pfa-snoR5774 | 8 | GQ282334 |
14 | + | 981529-981614 | 86 | comp_ana. | intergenic | |||||
Pfa_snoR_30 | C/D | 14 | + | 982097-982170 | 74 | lib. | intergenic | Pfa-snoR5908 | 21 | GQ282335 |
14 | - | 982096-982170 | 75 | comp_ana. | intergenic | |||||
Pfa_snoR_02 | C/D | 3 | - | 398155-398240 | 86 | lib. | intergenic | Pfa-snoR6296 | 14 | GQ282312 |
3 | - | 398156-398238 | 83 | comp_ana. | intergenic | |||||
Pfa_snoR_12 | C/D | 11 | - | 395253-395337 | 85 | lib. | intergenic | Pfa-snoR5629 | 74 | GQ282319 |
11 | - | 395252-395336 | 85 | comp_ana. | intergenic | |||||
Pfa_snoR_16 | C/D | 13 | - | 243860-243974 | 115 | lib. | intergenic | Pfa-snoR6240 | 96 | GQ282321 |
13 | - | 243850-243969 | 120 | comp_ana. | intergenic | |||||
Pfa_snoR_13 | C/D | 11 | + | 98 | lib. | intergenic | Pfa-U14B | 10 | ||
11 | + | 101 | comp_ana. | intergenic | ||||||
Pfa_snoR_U14a | C/D | 11 | + | 99 | lib. | intergenic | Pfa-U14A | 20 | GQ282353 | |
nd. | comp_ana. nd. | |||||||||
Pfa_snoR_24 | C/D | 14 | - | 973090-973167 | 78 | lib. | intergenic | Pfa-snoR5907 | 26 | GQ282329 |
14 | - | 973088-973167 | 80 | comp_ana. | intergenic | |||||
Pfa_snoR_07 | C/D | 11 | - | 381173-381259 | 87 | lib. | intergenic | Pfa-snoR6303 | 14 | GQ282316 |
11 | - | 381171-381258 | 88 | comp_ana. | intergenic | |||||
Pfa_snoR_27 | H/ACA | 14 | + | 979406-979546 | 141 | lib. | intergenic | Pfa-snoR6372 | 12 | GQ282332 |
14 | + | 979405-979546 | 142 | comp_ana. | intergenic | |||||
Pfa_snoR_22 | C/D | 14 | - | 92793-92873 | 81 | lib. | intronic | Pfa-snoR6261 | 9 | GQ282327 |
14 | - | 92791-92873 | 83 | comp_ana. | intronic | |||||
Pfa_snoR_06 | C/D | 8 | + | 240177-240259 | 83 | lib. | intronic | Pfa-snoR5909 | 13 | GQ282315 |
8 | + | 240177-240261 | 85 | comp_ana. | intronic | |||||
Pfa_snoR_09 | C/D | 11 | - | 391066-391147 | 82 | lib. | intronic | Pfa-snoR6039 | 79 | GQ282318 |
11 | - | 391065-391147 | 83 | comp_ana. | intronic | |||||
Pfa_snoR_08 | C/D | 11 | - | 390441-390508 | 68 | lib. | intronic | Pfa-snoR5806 | 72 | GQ282317 |
11 | - | 390439-390508 | 70 | comp_ana. | intronic | |||||
Pfa_snoR_20 | C/D | 13 | + | 76 | lib. | intronic | Pfa-snoR6270 | 25 | GQ282325 | |
13 | + | 80 | comp_ana. | intronic | ||||||
Pfa_snoR_19 | C/D | 13 | - | 96 | lib. | intronic | Pfa-snoR6422 | 3 | GQ282324 | |
13 | - | 98 | comp_ana. | intronic | ||||||
Pfa_snoR_21 | C/D | 13 | + | 145 | lib. | intronic | Pfa-snoR6259 | 23 | GQ282326 | |
13 | + | 145 | comp_ana. | intronic | ||||||
Pfa_snoR_26 | C/D | 14 | + | 975187-975332 | 146 | lib. | intronic | Pfa-snoR6396 | 3 | GQ282331 |
14 | + | 975173-975332 | 160 | comp_ana. | intronic | |||||
Pfa_snoR_25 | C/D | 14 | - | 973949-974016 | 68 | lib. | intronic | Pfa-snoR5906 | 24 | GQ282330 |
14 | - | 973947-974016 | 70 | comp_ana. | intronic | |||||
Pfa_snoR_01 | C/D | 2 | - | 767978-768057 | 80 | lib. | intergenic | Pfa-snoR6264 | 27 | GQ282311 |
2 | - | 767976-768057 | 82 | comp_ana. | intergenic | |||||
Pfa_snoR_04 | C/D | 5 | + | 465820-465936 | 117 | lib. | Pfa-snoR6241 | 21 | GQ282313 | |
5 | + | 465765-465944 | 180 | comp_ana. | intronic_AS |
|||||
Pfa_snoR_05 | C/D | 8 | - | 98 | lib. | intronic | Pfa-snoR5624 | 42 | GQ282314 | |
8 | - | 98 | comp_ana. | intronic | ||||||
Pfa_sno/scaR_10 | C/D | 11 | - | 391763-391837 | 75 | lib. | intronic | 8 | GQ282355 | |
11 | - | 391761-391837 | 77 | comp_ana. | intronic | |||||
Pfa_snoR_17 | C/D | 13 | + | 77 | lib. | intronic | Pfa-snoR5939 | 4 | GQ282322 | |
13 | + | 80 | comp_ana. | intronic | ||||||
Pfa_snoR_18 | C/D | 13 | + | 80 | lib. | intronic | Pfa-snoR6372a | 4 | GQ282323 | |
13 | + | 85 | comp_ana. | |||||||
Pfa_snoR_28 | C/D | 14 | + | 979708-979778 | 71 | lib. | intergenic | Pfa-snoR6239 | 107 | GQ282333 |
14 | + | 979708-979780 | 73 | comp_ana. | intergenic | |||||
Pfa_snoR_14 | C/D | 12 | - | 479485-479526 | 42 | lib. | intergenic | Pfa-snoR6449 | 1 | Psnotfl GQ282320 |
12 | - | 479483-479609 | 127 | comp_ana. | intergenic | |||||
Pfa_snoR_31 | H/ACA | 14 | + | 982874-982960 | 87 | lib. | intergenic | Pfa-snoR6142 | 2 | Psnotfl GQ282336 |
14 | + | 982812-982956 | 145 | comp_ana. | Intergenic | |||||
Pfa_snoR_32 | H/ACA | 14 | + | 982015-982157 | 143 | lib. | intergenic | Pfa-snoR6310 | 11 | GQ282337 |
Pfa_snoR_33 | H/ACA | 14 | + | 982271-982464 | 194 | lib. | intergenic | Pfa-snoR7194 | 3 | GQ282338 |
Ruf_4 | 14 | + | 982251-982525 | 275 | comp_ana. | intergenic | ||||
Pfa_snoR_36 | H/ACA | 7 | + | 438841-438897 | 57 | lib. | intronic | Pfa-snoR6397 | 3 | Psnotfl GQ282343 |
Pfa_snoR_37 | C/D | 8 | - | 237540-237691 | 152 | lib. | intergenic | Pfa-snoR5779 | 8 | GQ282344 |
Pfa_snoR_38 | C/D | 14 | - | 875118-875266 | 149 | lib. | intergenic | Pfa-snoR6038 | 17 | GQ282345 |
Pfa_scaR_39 | C/D | 14 | + | 71 | lib. | intergenic | Pfa-scaR7013 | 1 | GQ282356 | |
Pfa_snoR_40 | H/ACA | 8 | + | 240998-241145 | 146 | lib. | intronic | Pfa-snoR7002 | 3 | GQ282346 |
Ruf_3 | 8 | + | 240934-241120 | 187 | comp_ana. | intronic | ||||
Pfa_snoR_41 | H/ACA | 2 | - | 767585-767739 | 155 | lib. | CDS-hypprotein | Pfa-snoR6389 | 2 | GQ282347 |
Pfa_snoR_42a | H/ACA | 6 | - | 74260-74410 | 151 | lib. | intergenic | Pfa-snoR5588 | 24 | paralog GQ282348 |
Pfa_snoR_42b1 | H/ACA | 8 | - | 65753-65902 | 150 | lib. | intergenic | Pfa-snoR5765b | 1 | paralog GQ282349 |
Pfa_snoR_42b2 | H/ACA | 1 | + | 586442-586591 | 150 | lib. | intergenic | Pfa-snoR5765b | 1 | paralog GQ282350 |
Pfa_snoR_43 | H/ACA | 10 | + | 895922-895968 | 47 | lib. | intronic | Pfa-snR6126 | 2 | Psnotfl GQ282351 |
Pfa_snoR_44 | H/ACA | 3 | - | 215995-216084 | 90 | lib. | intronic | Pfa-snoR6168 | 4 | GQ282352 |
Pfa_snoR_35 | H/ACA | 6 | + | 74 | lib. | intronic | Pfa-snoR6444 | 2 | GQ282342 | |
PF3D7_0829900 | non-coding rna | |||||||||
PF3D7_0830100 | non-coding rna | |||||||||
PF3D7_1148100 | non-coding rna | |||||||||
PF3D7_1148200 | non-coding rna | |||||||||
PF3D7_1148500 | non-coding rna | |||||||||
PF3D7_1229200 | non-coding rna | |||||||||
pf3d7_1309120 | non-coding rna | |||||||||
pf3d7_1370800 | non-coding rna | |||||||||
pf3d7_1370900 | non-coding rna | |||||||||
pf3d7_1421700 | non-coding rna | |||||||||
pf3d7_1424800 | non-coding rna |