Transcription associated proteins implicated in the transcriptional machinery
Bischoff E, Vaquero C. In silico and biological survey of transcription-associated proteins implicated in the transcriptional machinery during the erythrocytic development of Plasmodium falciparum. BMC Genomics. 2010 Jan 15;11:34. PMID: 20078850
PfID Classes Sub-classes Annotation EC# Transcript
98241 PF3D7_1342700 I. General Transcription Factors 1. Polymerase core subunit DNA-directed RNA polymerases I, II, and III subunit RPABC4, putative
98130 PF3D7_0708100 DNA-directed RNA polymerases I, II, and III subunit RPABC5, putative 2.7.7.6
98250 PF3D7_1364800 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative 2.7.7.6
98088 PF3D7_0303300 DNA-directed RNA polymerases I, II, and III subunit RPABC2, putative 2.7.7.6
98211 PF3D7_1213700 DNA-directed RNA polymerases I, II, and III subunit RPABC3, putative 2.7.7.6
98091 PF3D7_0318200 DNA-directed RNA polymerase II subunit RPB1 2.7.7.6
98228 PF3D7_1304900 DNA-directed RNA polymerase II subunit RPB11, putative 2.7.7.6
98085 PF3D7_0215700 DNA-directed RNA polymerase II subunit RPB2 2.7.7.6
98159 PF3D7_0923000 DNA-directed RNA polymerase II subunit RPB3 2.7.7.6
98083 PF3D7_0205500 DNA-directed RNA polymerase II 16 kDa subunit, putative 2.7.7.6
98177 PF3D7_1027400 DNA-directed RNA polymerase II subunit RPB7, putative 2.7.7.6
98079 PF3D7_0110400 DNA-directed RNA polymerase II subunit RPB9, putative 2.7.7.6
98151 PF3D7_0822100 2. Polymerase accessories mediator of RNA polymerase II transcription subunit 7, putative
98280 PF3D7_1475000 mediator of RNA polymerase ii transcription subunit 31, putative
98188 PF3D7_1112500 RNA transcription, translation and transport factor protein, putative
98084 PF3D7_0213900 rtr1 domain-containing protein, putative
98231 PF3D7_1308100 3. General coactivators involved in initiation CCAAT-binding transcription factor, putative
98202 PF3D7_1146600
ooocyst rupture protein 1, putative
98261 PF3D7_1439500 oocyst rupture protein 2, putative
98135 PF3D7_0716400 transcription initiation factor IIA subunit 1, putative
98225 PF3D7_1250700 transcription initiation factor iia subunit 2, putative
98164 PF3D7_0933700 conserved Plasmodium protein, unknown function
98225 PF3D7_1250700 transcription initiation factor iia subunit 2, putative
98082 PF3D7_0110800
transcription initiation factor TFIIB, putative
98104 PF3D7_0508400 conserved protein, unknown function
98219 PF3D7_1234100
bromodomain protein 5
98137 PF3D7_0724700 bromodomain protein 6, putative, bdp6
98163 PF3D7_0929000 transcription initiation factor TFIID subunit 7, putative
98102 PF3D7_0506200
TATA-box-binding protein
98257 PF3D7_1428800 transcription initiation TFIID-like, putative
98110 PF3D7_0522200 transcription initiation factor TFIID subunit 10, putative
98136 PF3D7_0717300 transcription initiation factor IIE subunit alpha, putative
98238 PF3D7_1326700 conserved apicomplexan protein, unknown function
98094 PF3D7_0323600 bsd domain-containing protein, putative
98264 PF3D7_1441900 RNA polymerase II transcription factor B subunit 5, putative 2.7.7.6
98227 PF3D7_1304700 cyclin
98105 PF3D7_0512300 CDK-activating kinase assembly factor mat1
98245 PF3D7_1353500 RNA polymerase II transcription factor B subunit 4, putative 2.7.7.6
98233 PF3D7_1314900
general transcription factor IIH subunit 2
98224 PF3D7_1244200 RNA polymerase II transcription factor B subunit 2, putative 2.7.7.6
98181 PF3D7_1037600 TFIIH basal transcription factor complex helicase XBP subunit, putative 3.6.4.12
98165 PF3D7_0934100
TFIIH basal transcription factor complex helicase XPD subunit 3.6.4.12
98201 PF3D7_1144600 transcription initiation factor IIF subunit beta, putative
98146 PF3D7_0811300 4. General coactivators involved in initiation and elongation CCR4-associated factor 1
98103 PF3D7_0507600 protein caf40, putative
98076 PF3D7_0107200
ccr4 domain-containing protein 3, putative
98092 PF3D7_0319200
ccr4 domain-containing protein 4, putative
98109 PF3D7_0519500 ccr4 domain-containing protein 1, putative
98182 PF3D7_1103800 CCR4-NOT transcription complex subunit not1-g, putative
98254 PF3D7_1417200 CCR4-NOT transcription complex subunit not1, putative
98195 PF3D7_1128600 CCR4-NOT transcription complex subunit 2, putative
98168 PF3D7_1006100 CCR4-NOT transcription complex subunit 5, putative
98220 PF3D7_1235300 CCR4-NOT transcription complex subunit 4, putative
98256 PF3D7_1426100 transcription factor btf3, putative
98194 PF3D7_1128200
multiprotein bridging factor type 1, putative
98178 PF3D7_1030000 5. General coactivators involved elongation transcription elongation factor SPT4, putative
98119 PF3D7_0610900 transcription elongation factor SPT5, putative
98252 PF3D7_1406200 conserved Plasmodium protein, unknown function
98133 PF3D7_0714500 transcription elongation factor s-II, putative
98251 PF3D7_1406100 tubby domain-containing protein, putative
98134 PF3D7_0715100 C-Myc-binding protein, putative
98093 PF3D7_0320900
II. Chromatin-related Factors   1. Histones H2A.Z
98123 PF3D7_0617800
histone H2A
98132 PF3D7_0714000
histone H2B variant
98185 PF3D7_1105100
histone H2B
98240 PF3D7_1333700
histone H3-like centromeric protein CSE4
98118 PF3D7_0610400
histone H3
98124 PF3D7_0617900
histone H3 variant
98184 PF3D7_1105000
histone H4
98180 PF3D7_1033700
2. Chromatin structuration bromodomain protein 2
98281 PF3D7_1475600 bromodomain protein 4, putative, bdp4
98080 PF3D7_0110500 bromodomain protein 3, putative; bdp3
98210 PF3D7_1212900
bromodomain protein 2, putative
98198 PF3D7_1140700 chromo domain-containing protein, putative
98214 PF3D7_1220900
heterochromatin protein 1
98087 PF3D7_0218700 pre-mRNA-processing protein 45, putative
98126 PF3D7_0624600
iswi chromatin-remodeling complex atpase 3.6.4.12
98176 PF3D7_1023900
SNF2 helicase, putative chromodomain-helicase-DNA-binding protein 1 homolog, putative 3.6.4.12
98086 PF3D7_0216000 DEAD/DEAH box helicase, putative 3.6.4.13
98246 PF3D7_1357500 DNA helicase, putative 3.6.4.12
98150 PF3D7_0820000
helicase SRCAP, putative Snf2-related CBP activator, putative
98116 PF3D7_0604600 DNA helicase, putative 3.6.4.12
98149 PF3D7_0818700 DNA helicase, putative 3.6.4.12
98183 PF3D7_1104200 chromatin remodeling protein
98156 PF3D7_0912100 zinc finger protein, putative
98259 PF3D7_1433300
histone-binding protein rbbp7, putative,
98081 PF3D7_0110700
chromatin assembly factor 1 subunit c, putative; caf1c; rbap48
98101 PF3D7_0501800
3. Chromatin remodelling chromatin assembly factor 1 subunit a CAF1A
98263 PF3D7_1441400
FACT complex subunit SSRP1, putative
98107 PF3D7_0517400 FACT complex subunit SPT16, putative
98144 PF3D7_0809700
RuvB-like helicase 1 3.6.4.12
98186 PF3D7_1106000
RuvB-like helicase 2 3.6.4.12
98249 PF3D7_1362200
RuvB-like helicase 3 3.6.4.12
98272 PF3D7_1464000 YL1 nuclear protein, putative
98127 PF3D7_0628600 DNA methyltransferase 1-associated protein 1, putative
98158 PF3D7_0919000
nucleosome assembly protein
98204 PF3D7_1203700
nucleosome assembly protein
98203 PF3D7_1202900
high mobility group protein B1
98147 PF3D7_0817900
high mobility group protein B2
98248 PF3D7_1359200 high mobility group protein B4, putative
98243 PF3D7_1350700 4. Modifying enzymes N6-adenine-specific methylase, putative 2.1.1.62
98191 PF3D7_1118600
histone acetyltransferase
98152 PF3D7_0823300
histone acetyltransferase GCN5 2.3.1.48
98142 PF3D7_0805400 acetyltransferase, putative 2.3.1.1
98167 PF3D7_1003300 N-terminal acetyltransferase A complex catalytic subunit ARD1, putative 2.3.1.88
98237 PF3D7_1323300 acetyltransferase, GNAT family, putative 2.3.1.1
98260 PF3D7_1437000
N-acetyltransferase, putative 2.3.1.1
98077 PF3D7_0109500 N-acetyltransferase, putative 2.3.1.1
98128 PF3D7_0629000 Glucosamine-6P N-acetyltransferase 2.3.1.1
98170 PF3D7_1008000
histone deacetylase 2 3.5.1.98
98278 PF3D7_1472200
histone deacetylase, putative 3.5.1.98
98161 PF3D7_0925700
histone deacetylase 1 3.5.1.98
98239 PF3D7_1328800
transcriptional regulatory protein sir2a 3.5.1.98
98268 PF3D7_1451400 transcriptional regulatory protein sir2b 3.5.1.98
98145 PF3D7_0809900 jmjc domain-containing protein 1, putative 1.14.11.27
98226 PF3D7_1303800 conserved Plasmodium protein, unknown function
98236 PF3D7_1322100
set domain-containing protein 2 2.1.1.43
98153 PF3D7_0827800
SET domain protein, putative 2.1.1.43
98189 PF3D7_1115200
histone-lysine n-methyltransferase set7 2.1.1.43
98095 PF3D7_0403900 SET domain protein, putative 2.1.1.43
98129 PF3D7_0629700
SET domain protein, putative 2.1.1.43
98212 PF3D7_1214200
histone-lysine n-methyltransferase SET5 2.1.1.43
98131 PF3D7_0711400 histone deacetylase complex subunit SAP18, putative
98143 PF3D7_0807000 YEATS domain-containing protein, putative
98229 PF3D7_1305200 III. Specific Trancription Factors 1 SC. Apicomplexan specifc AP2 AP2 domain transcription factor, putative
98258 PF3D7_1429200
AP2 domain transcription factor AP2-O3, putative
98120 PF3D7_0611200
ap2 domain transcription factor ap2-exp2
98140 PF3D7_0802100 ap2 domain transcription factor ap2-lt
98190 PF3D7_1115500 AP2 domain transcription factor, putative
98270 PF3D7_1456000
AP2 domain transcription factorAP2-HC
98106 PF3D7_0516800 AP2 domain transcription factor AP2-O2, putative
98115 PF3D7_0604100
SPE2-interacting protein transcription factor with AP2 domain(s)
98121 PF3D7_0613800 AP2 domain transcription factor, putative
98235 PF3D7_1317200 AP2 domain transcription factor AP2-FG
98096 PF3D7_0404100
AP2 domain transcription factor AP2-SP2, putative
98139 PF3D7_0730300 AP2 domain transcription factor AP2-L, putative
98253 PF3D7_1408200
AP2 domain transcription factor AP2-G2
98275 PF3D7_1466400 AP2 domain transcription factor AP2-SP/EXP
98125 PF3D7_0622900
AP2 domain transcription factor AP2Tel
98187 PF3D7_1107800
AP2 domain transcription factor, putative