Transcription related proteins encoding genes
Adapted from Bischoff E, Vaquero C. In silico and biological survey of transcription-associated proteins implicated in the transcriptional machinery during the erythrocytic development of Plasmodium falciparum. BMC Genomics. 2010 11:34.PMID: 20078850
Classes Sub-classes PfID Annotation EC# Transcript
34988 General Transcription Factors Polymerase core subunit PF3D7_1342700 DNA-directed RNA polymerases I, II, and III subunit RPABC4, putative
34895 PF3D7_0708100 DNA-directed RNA polymerases I, II, and III subunit RPABC5, putative 2.7.7.6
34998 PF3D7_1364800 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative 2.7.7.6
34859 PF3D7_0303300 DNA-directed RNA polymerases I, II, and III subunit RPABC2, putative 2.7.7.6
34965 PF3D7_1213700 DNA-directed RNA polymerases I, II, and III subunit RPABC3, putative 2.7.7.6
34861 PF3D7_0318200 DNA-directed RNA polymerase II subunit RPB1 2.7.7.6
34976 PF3D7_1304900 DNA-directed RNA polymerase II subunit RPB11, putative 2.7.7.6
34856 PF3D7_0215700 DNA-directed RNA polymerase II subunit RPB2 2.7.7.6
34920 PF3D7_0923000 DNA-directed RNA polymerase II subunit RPB3 2.7.7.6
34855 PF3D7_0205500 DNA-directed RNA polymerase II 16 kDa subunit, putative 2.7.7.6
34935 PF3D7_1027400 DNA-directed RNA polymerase II subunit RPB7, putative 2.7.7.6
34851 PF3D7_0110400 DNA-directed RNA polymerase II subunit RPB9, putative 2.7.7.6
34913 Polymerase accessories PF3D7_0822100 mediator of RNA polymerase II transcription subunit 7, putative
34945 PF3D7_1108000 IWS1-like protein, putative
35023 PF3D7_1475000 mediator of RNA polymerase ii transcription subunit 31, putative
34979 General coactivators involved in initiation PF3D7_1308100 CCAAT-binding transcription factor, putative
34957 PF3D7_1146600
ooocyst rupture protein 1, putative
35008 PF3D7_1439500 oocyst rupture protein 2, putative
34899 PF3D7_0716400 transcription initiation factor IIA subunit 1, putative
34854 PF3D7_0110800
transcription initiation factor TFIIB, putative
34873 PF3D7_0508400 conserved protein, unknown function
34871 PF3D7_0506200
TATA-box-binding protein
35004 PF3D7_1428800 transcription initiation TFIID-like, putative
34878 PF3D7_0522200 transcription initiation factor TFIID subunit 10, putative
34900 PF3D7_0717300 transcription initiation factor IIE subunit alpha, putative
34986 PF3D7_1326700 conserved apicomplexan protein, unknown function
34864 PF3D7_0323600 bsd domain-containing protein, putative
35010 PF3D7_1441900 RNA polymerase II transcription factor B subunit 5, putative 2.7.7.6
34992 PF3D7_1353500 RNA polymerase II transcription factor B subunit 4, putative 2.7.7.6
34981 PF3D7_1314900
general transcription factor IIH subunit 2
34975 PF3D7_1244200 RNA polymerase II transcription factor B subunit 2, putative 2.7.7.6
34908 General coactivators involved in initiation and elongation PF3D7_0811300 CCR4-associated factor 1
38924 PF3D7_0507600 protein caf40, putative
38897 PF3D7_0107200
ccr4 domain-containing protein 3, putative
38906 PF3D7_0319200
ccr4 domain-containing protein 4, putative
38933 PF3D7_0519500 ccr4 domain-containing protein 1, putative
34939 PF3D7_1103800 CCR4-NOT transcription complex subunit not1-g, putative
35001 PF3D7_1417200 CCR4-NOT transcription complex subunit not1, putative
34951 PF3D7_1128600 CCR4-NOT transcription complex subunit 2, putative
34926 PF3D7_1006100 CCR4-NOT transcription complex subunit 5, putative
34972 PF3D7_1235300 CCR4-NOT transcription complex subunit 4, putative
35003 PF3D7_1426100 transcription factor btf3, putative
34950 PF3D7_1128200
multiprotein bridging factor type 1, putative
34936 Transcription factors PF3D7_1030000 transcription elongation factor SPT4, putative
34886 PF3D7_0610900 transcription elongation factor SPT5, putative
34898 PF3D7_0714500 transcription elongation factor s-II, putative
34999 PF3D7_1406100 tubby domain-containing protein, putative
34931 PF3D7_1011800 PRE-binding protein
34863 Chromatin-related Factors   Histones PF3D7_0320900
H2A.Z
34890 PF3D7_0617800
histone H2A
34897 PF3D7_0714000
histone H2B variant
34942 PF3D7_1105100
histone H2B
34885 PF3D7_0610400
histone H3
34891 PF3D7_0617900
histone H3 variant
34941 PF3D7_1105000
histone H4
34938  Chromatin structuration PF3D7_1033700
bromodomain protein 2
35024 PF3D7_1475600 bromodomain protein 4, putative, bdp4
34852 PF3D7_0110500 bromodomain protein 3, putative; bdp3
34964 PF3D7_1212900
bromodomain protein 2, putative
34954 PF3D7_1140700 chromo domain-containing protein, putative
34968 PF3D7_1220900
heterochromatin protein 1
34858 PF3D7_0218700 pre-mRNA-processing protein 45, putative
34893 PF3D7_0624600
iswi chromatin-remodeling complex atpase 3.6.4.12
34934 PF3D7_1023900
SNF2 helicase, putative chromodomain-helicase-DNA-binding protein 1 homolog, putative 3.6.4.12
34857 PF3D7_0216000 DEAD/DEAH box helicase, putative 3.6.4.13
34993 PF3D7_1357500 DNA helicase, putative 3.6.4.12
34912 PF3D7_0820000
helicase SRCAP, putative Snf2-related CBP activator, putative
34883 PF3D7_0604600 DNA helicase, putative 3.6.4.12
34911 PF3D7_0818700 DNA helicase, putative 3.6.4.12
34940 PF3D7_1104200 chromatin remodeling protein
35006 PF3D7_1433300
histone-binding protein rbbp7, putative,
34853 PF3D7_0110700
chromatin assembly factor 1 subunit c, putative; caf1c; rbap48
34870 Chromatin remodelling PF3D7_0501800
chromatin assembly factor 1 subunit a CAF1A
35009 PF3D7_1441400
FACT complex subunit SSRP1, putative
34875 PF3D7_0517400 FACT complex subunit SPT16, putative
34906 PF3D7_0809700
RuvB-like helicase 1 3.6.4.12
34943 PF3D7_1106000
RuvB-like helicase 2 3.6.4.12
34997 PF3D7_1362200
RuvB-like helicase 3 3.6.4.12
35017 PF3D7_1464000 YL1 nuclear protein, putative
34919 PF3D7_0919000
nucleosome assembly protein
34959 PF3D7_1203700
nucleosome assembly protein
34958 PF3D7_1202900
high mobility group protein B1
34909 PF3D7_0817900
high mobility group protein B2
34961 PF3D7_1205800 high mobility group protein B3, putative
34995 PF3D7_1359200 high mobility group protein B4, putative
34990 Modifying enzymes PF3D7_1350700 N6-adenine-specific methylase, putative 2.1.1.62
34948 PF3D7_1118600
histone acetyltransferase
34914 PF3D7_0823300
histone acetyltransferase GCN5 2.3.1.48
34904 PF3D7_0805400 acetyltransferase, putative 2.3.1.1
34925 PF3D7_1003300 N-terminal acetyltransferase A complex catalytic subunit ARD1, putative 2.3.1.88
34985 PF3D7_1323300 acetyltransferase, GNAT family, putative 2.3.1.1
35007 PF3D7_1437000
N-acetyltransferase, putative 2.3.1.1
34849 PF3D7_0109500 N-acetyltransferase, putative 2.3.1.1
35022 PF3D7_1472200
histone deacetylase, putative 3.5.1.98
34922 PF3D7_0925700
histone deacetylase 1 3.5.1.98
34987 PF3D7_1328800
transcriptional regulatory protein sir2a 3.5.1.98
35014 PF3D7_1451400 transcriptional regulatory protein sir2b 3.5.1.98
34907 PF3D7_0809900 jmjc domain-containing protein 1, putative 1.14.11.27
34984 PF3D7_1322100
set domain-containing protein 2 2.1.1.43
34915 PF3D7_0827800
SET domain protein, putative 2.1.1.43
34946 PF3D7_1115200
histone-lysine n-methyltransferase set7 2.1.1.43
34865 PF3D7_0403900 SET domain protein, putative 2.1.1.43
34894 PF3D7_0629700
SET domain protein, putative 2.1.1.43
34966 PF3D7_1214200
histone-lysine n-methyltransferase SET5 2.1.1.43
34896 PF3D7_0711400 histone deacetylase complex subunit SAP18, putative
34905 PF3D7_0807000 YEATS domain-containing protein, putative
34977 Specific Trancription Factors Apicomplexan specifc AP2 PF3D7_1305200 AP2 domain transcription factor, putative
35005 PF3D7_1429200
AP2 domain transcription factor AP2-O3, putative
34887 PF3D7_0611200
ap2 domain transcription factor ap2-exp2
34902 PF3D7_0802100 ap2 domain transcription factor ap2-lt
34947 PF3D7_1115500 AP2 domain transcription factor, putative
35016 PF3D7_1456000
AP2 domain transcription factorAP2-HC
34874 PF3D7_0516800 AP2 domain transcription factor AP2-O2, putative
34882 PF3D7_0604100
SPE2-interacting protein transcription factor with AP2 domain(s)
34888 PF3D7_0613800 AP2 domain transcription factor, putative
34983 PF3D7_1317200 AP2 domain transcription factor AP2-FG
34866 PF3D7_0404100
AP2 domain transcription factor AP2-SP2, putative
34901 PF3D7_0730300 AP2 domain transcription factor AP2-L, putative
35000 PF3D7_1408200
AP2 domain transcription factor AP2-G2
35020 PF3D7_1466400 AP2 domain transcription factor AP2-SP/EXP
34892 PF3D7_0622900
AP2 domain transcription factor AP2Tel
34944 PF3D7_1107800
AP2 domain transcription factor, putative
34953 PF3D7_1139300 ap2 domain transcription factor ap2-g5, putative
34956 PF3D7_1143100
AP2 domain transcription factor AP2-O
34989 PF3D7_1342900 ap2 domain transcription factor ap2-hs
34868 PF3D7_0420300 AP2 domain transcription factor
34971 PF3D7_1222600
AP2 domain transcription factor AP-G
34927 PF3D7_1007700
AP2 domain transcription transcription factor AP2-I
34991 PF3D7_1350900 AP2 domain transcription factor AP2-O4, putative
35012 PF3D7_1449500 AP2 domain transcription factor, putative, AP2-O5
34924 PF3D7_0934400 AP2 domain transcription factor, putative
34970 PF3D7_1222400
AP2 domain transcription factor
34973 PF3D7_1239200 transcription factor with AP2 domain(s)
34978 Zinc finger PF3D7_1307900 tripartite motif protein, putative
34876 PF3D7_0517900 zinc finger protein, putative
34881 PF3D7_0602200 MYND-type zinc finger protein, putative
34884 PF3D7_0607100 MYND finger protein, putative
34930 PF3D7_1009400 zinc finger protein, putative
35013 PF3D7_1450400 E3 ubiquitin-protein ligase znf598, putative
35019 PF3D7_1464400 zinc finger protein, putative
34860 PF3D7_0315800 zinc finger protein, putative, HAKAI