Nuclear genes with mitochondrial signal sequences
Compiled by A.B. Vaidya and M.W. Mather. Additional annotations by the curator are in green letters. and van Esveld SL, Meerstein-Kessel L, Boshoven C, Baaij JF, Barylyuk K, Coolen  JPM, van Strien J, Duim RAJ, Dutilh BE, Garza DR, Letterie M, Proellochs NI, de Ridder  N, Venkatasubramanian PB, de Vries LE, Waller RF, Kooij TWA, Huynen MA. A Prioritized and Validated Resource of Mitochondrial Proteins in Plasmodium Identifies Unique Biology. mSphere. 2021 Sep 8:e0061421. PMID: 34494883.
Function PfID Annotation Transcript EC
Replication PF3D7_0625300
mitochondrial DNA polymerase
2.7.7.7
5107 PF3D7_1331100 DNA polymerase theta, putative
3.6.4.13
15706 PF3D7_0204800 3'-5' exonuclease, putative
3.1.11.1
14626 PF3D7_0917100 N-glycosylase/DNA lyase, putative
3.2.2.-
5147 PF3D7_0305600
AP endonuclease (DNA-[apurinic or apyrimidinic site] lyase), putative
4.2.99.18
5061 PF3D7_0614800 endonuclease III homologue, putative
4.2.99.18
5101 PF3D7_1458700
exonuclease V, mitochondrial, putative
3.1.11.5
5310 PF3D7_0502900 TIM10/ddp family zinc finger protein, putative
25553 PF3D7_1032100
mRNA-decapping enzyme subunit 1, putative
5174 PF3D7_1227100
DNA helicase 60
3.6.4.12
PF3D7_1129500 A/G-specific adenine glycosylase, putative
3.2.2.20
5254 PF3D7_1417900 cleavage and polyadenylation specificity factor subunit 4, putative
5067 PF3D7_1449400 crossover junction endonuclease MUS81, putative
5217 PF3D7_1463300 DNA polymerase alpha subunit B, putative
2.7.7.7
5124 PF3D7_1347100
DNA topoisomerase 3
5.99.1.2
5298 PF3D7_1220900
heterochromatin protein 1
5140 PF3D7_1247000 F-box only protein 9 homolog, putative
25777 PF3D7_1203000
origin recognition complex subunit 1
5316 PF3D7_1443500 poly(A)-specific ribonuclease PARN, putative 3.1.13.4
15815 PF3D7_0403100 regulator of chromosome condensation, putative
5187 PF3D7_0203300 ERCC1 nucleotide excision repair protein, putative
3.1.21.1
5095 PF3D7_1415000
uracil-DNA glycosylase
3.2.2.27
5121 PF3D7_1123800 structural maintenance of chromosomes protein 5, putative
5230 PF3D7_0518200
SWIB/MDM2 domain-containing protein
5080 PF3D7_0503200 cell division control protein 6, putative, CDC6
5087 PF3D7_1234900 chch domain-containing protein, putative
20727 PF3D7_1440100 cohesin complex subunit, putative
33930 PF3D7_1408400 FANCJ-like helicase, putative
3.6.4.12
34009 PF3D7_1023400 HORMA domain protein, putative
5102 PF3D7_1314300 macro domain-containing protein, putative
3.5.1.98
20786 PF3D7_0921300 rap protein, putative
5271 PF3D7_1114400 rap protein, putative
5183 Transcription
PF3D7_1332700 ATP-dependent RNA helicase DBP8, putative
3.6.4.13
5262 PF3D7_0405000 ATP-dependent RNA helicase ddx51, putative
3.6.4.13
5280 PF3D7_0824100 3'-5' exonuclease, putative
3.1.11.1
5093 PF3D7_0721300
ATP-dependent DNA helicase DDX31
3.6.4.13
5189 PF3D7_1445200 ATP-dependent RNA helicase MAK5, putative
3.6.4.13
5312 PF3D7_0827000 ATP-dependent RNA helicase DBP10, putative
3.6.4.13
5221 PF3D7_1307300 ATP-dependent RNA helicase dbp6
3.6.4.13
5252 PF3D7_1037600 TFIIH basal transcription factor complex helicase XBP subunit, putative
3.6.4.12
5243 PF3D7_1472700 DNA-directed RNA polymerase, alpha subunit, putative
2.7.7.6
5112 PF3D7_1329000 DNA-directed RNA polymerase III subunit RPC1, putative
2.7.7.6
5158 PF3D7_1125300
DNA-directed RNA polymerase
2.7.7.6
5311 PF3D7_1305200 AP2 domain transcription factor, putative
5118 PF3D7_1115500 AP2 domain transcription factor, putative
5159 PF3D7_0606500 polypyrimidine tract binding protein, putative
5314 PF3D7_0717400 queuine tRNA-ribosyltransferase, putative
2.4.2.29
5122 PF3D7_1242200
queuine tRNA-ribosyltransferase, putative
2.4.2.29
5194 PF3D7_0521500 ribosomal large subunit pseudouridylate synthase, putative
4.2.1.70
5307 PF3D7_0525600 RNA methyltransferase, putative
2.1.1.56
5070 PF3D7_1127300 tRNA (guanine-N(7)-)-methyltransferase, putative
2.1.1.33
5300 PF3D7_1249900 ribosomal RNA small subunit methyltransferase a2, putative
5237 PF3D7_1415800
ribosomal RNA small subunit methyltransferase a1
2.1.1.183
25700 PF3D7_0615400 ribonuclease, putative
3.1.13.1
33992 PF3D7_0112000 TatD-like deoxyribonuclease
3.1.21.-
5207 PF3D7_1366500
nucleoside diphosphate kinase
2.7.4.6
5172 PF3D7_1117600
peptidyl-tRNA hydrolase ICT1, putative 3.1.1.29
5299 PF3D7_1363500
CCR4 domain-containing protein 2, putative
5242 PF3D7_1430600 endonuclease/exonuclease/phosphatase family protein, putative
5063 PF3D7_1454100 tRNA intron endonuclease, putative 3.1.27.9
5117 PF3D7_1019800 tRNA methyltransferase, putative
2.1.1.61
5206 PF3D7_0611200
ap2 domain transcription factor ap2-exp2
20730 PF3D7_1024200 RNA-binding protein, putative
25822 PF3D7_1435700 ataxin-2 like protein, putative
5149 Translation
5136 PF3D7_1350100
lysine--tRNA ligase
6.1.1.6
5267 PF3D7_1416800
lysine--tRNA ligase, putative
6.1.1.6
5181 PF3D7_0603700
phenylalanine--tRNA ligase
6.1.1.20
5056 PF3D7_1126000
threonine--tRNA ligase
6.1.1.3
5085 PF3D7_1461900
valine--tRNA ligase, putative
6.1.1.9
25521 PF3D7_1233000
elongation factor G
5082 PF3D7_1357000
elongation factor 1-alpha
5288 PF3D7_1357100 elongation factor 1-alpha
5276 PF3D7_1330600
elongation factor Tu, putative
5290 PF3D7_1312400
translation initiation factor IF-2, putative
5099 PF3D7_0704900 peptide chain release factor 2
3.1.1.29
5317 PF3D7_0932400 peptide chain release factor 1
3.1.1.29
5284 PF3D7_1461200 U3 small nucleolar ribonucleoprotein protein IMP3, putative
5164 PF3D7_0713600 ribosomal protein S5, mitochondrial, putative
5226 PF3D7_0932600 apicoplast ribosomal protein S6, putative
5094 PF3D7_1463800 ribosomal protein S6, mitochondrial, putative
5215 PF3D7_0718400 ribosomal protein S8, mitochondrial, putative
5064 PF3D7_1137100 ribosomal protein s9, mitochondrial, putative
5309 PF3D7_1454600 ribosomal protein S11, mitochondrial, putative
5074 PF3D7_0412100
ribosomal protein s12, mitochondrial, mtrps12
5202 PF3D7_1447300 mitochondrial ribosomal protein S14 precursor, putative
5110 PF3D7_1310900 ribosomal protein S15, mitochondrial, putativee
5256 PF3D7_0531200 ribosomal protein S16, mitochondrial, putative
5196 PF3D7_1365100
ribosomal protein s17, mitochondrial, mtrps17
5088 PF3D7_1211500
ribosomal protein S18, mitochondrial
5224 PF3D7_1027200
ribosomal protein S22, mitochondrial, putative
5295 PF3D7_1445300 ribosomal protein S29, mitochondrial, putative
5081 PF3D7_1312300 ribosomal protein S35, mitochondrial, putative
5222 PF3D7_0315500 ribosomal protein l47, mitochondrial, putative
PF3D7_0710900 50S ribosomal protein L1, mitochondrial, putative
20934 PF3D7_1210000 50S ribosomal protein L1, apicoplast, putative
5162 PF3D7_1132700 50s ribosomal protein l2, putative
5084 PF3D7_1245400 50S ribosomal protein L3, mitochondrial, putative
5160 PF3D7_0918200 50S ribosomal protein L3, apicoplast, putative
5145 PF3D7_0822000
mitochondrial ribosomal protein L4 precursor, putative
5315 PF3D7_1363300 50S ribosomal protein L9, mitochondrial, putative
5150 PF3D7_1110600
ribosomal protein L11, mitochondrial, putative
5251 PF3D7_0212200 ribosomal protein l12, mitochondrial, putative
25704 PF3D7_0524600 50S ribosomal protein L12, apicoplast, putative
5126 PF3D7_0519100 50s ribosomal protein L14, mitochondrial, putative
5167 PF3D7_0522500 50S ribosomal protein L17, apicoplast, putative
5193 PF3D7_1429700 ribosomal protein L15, mitochondrial, putative
5048 PF3D7_1404400 mitochondrial ribosomal protein L16 precursor, putative
5282 PF3D7_1431000 ribosomal protein L17, mitochondrial, putative
5184 PF3D7_0610000 ribosomal protein l19, mitochondrial, putative
5186 PF3D7_1474100 ribosomal protein L20, mitochondrial, putative
5213 PF3D7_1422100 ribosomal protein L21, mitochondrial, putative
5249 PF3D7_1010000 ribosomal protein L43, mitochondrial, putative
5212 PF3D7_1239100
ribosomal protein L23, mitochondrial, putative
5119 PF3D7_0605000 50S ribosomal protein L24, putative
27636 PF3D7_1223900 50S ribosomal protein L24, putative
5086 PF3D7_0316100 ribosomal protein l27, mitochondrial, putative
5104 PF3D7_1456600 ribosomal protein L28, mitochondrial, putative
5283 PF3D7_0503000
50S ribosomal protein L28, apicoplast, putative
5273 PF3D7_1208000 ribosomal protein L29, apicoplast, putative
25553 PF3D7_0626900 ribosomal protein l46, mitochondrial, putative
5204 PF3D7_1339500 ribosomal protein L49, mitochondrial, putative
5231 PF3D7_0413800 50S ribosomal protein L10, putative
5293 PF3D7_1010800 50S ribosomal protein L22, mitochondrial, putative
5111 PF3D7_0210400 50S ribosomal protein L33, putative
5264 PF3D7_0214200
ribosomal protein l13, mitochondrial; mtRPL13
5188 PF3D7_0827500 ribosomal protein l21, apicoplast, putative
5127 PF3D7_0406800 ribosomal protein L25
5142 PF3D7_1034200 ribosomal protein l27, putative
5185 PF3D7_0907800 ribosomal protein L35, apicoplast, putative
5228 PF3D7_1123700 ribosomal protein l37, mitochondrial, putative
5247 PF3D7_0604200 ribosomal protein l41, mitochondrial, putative
5241 PF3D7_1137500
ribosomal protein s14, apicoplast, putative
5054 PF3D7_1309600
ribosomal RNA methyltransferase, putative
2.1.1.56
5305 PF3D7_1020500 ribosomal silencing factor rsfs, putative
5260 PF3D7_0420400
ribosome-recycling factor
5218 PF3D7_0705300
mediator of RNA polymerase ii transcription subunit 10, putative
5055 PF3D7_0827100
translation initiation factor IF-2, putative
5246 PF3D7_0825200
translation initiation factor IF-3
5168 PF3D7_0925300
proline--tRNA ligase, putative
6.1.1.15
5100 PF3D7_1144100 mitochondrial large subunit ribosomal protein, putative
5044 PF3D7_0529500 cell cycle regulator protein, putative
14624 PF3D7_1235400
tetQ family GTPase, putative
34002 PF3D7_1435800 GTPase Era, putative
3.6.5.2
5076 PF3D7_0521800
afg1-like atpase, putative
33723 PF3D7_1233300 pentatricopeptide repeat domain-containing protein, putative