Splicing and non-sense-mediated decay factors
Sorber K, Dimon MT, DeRisi JL. RNA-Seq analysis of splicing in Plasmodium falciparum uncovers new splice junctions, alternative splicing and splicing of  antisense transcripts. Nucleic Acids Res. 2011 39(9):3820-
Complex PfID Annotation EC Transcript
snRNP core (stability and functionofU1, U2, U4 and U5 snRNPs) PF3D7_1414800 small nuclear ribonucleoprotein-associated protein B, putative
PF3D7_1125500
small nuclear ribonucleoprotein Sm D1, putative
PF3D7_0218500
small nuclear ribonucleoprotein Sm D2, putative
PF3D7_0909800
small nuclear ribonucleoprotein Sm D3, putative
PF3D7_1350200 small nuclear ribonucleoprotein E, putative
PF3D7_1126900 small nuclear ribonucleoprotein F, putative
PF3D7_0822300 small nuclear ribonucleoprotein G, putative
U6 core (stability and function of U6 snRNP) PF3D7_0520300 U6 snRNA-associated Sm-like protein LSm2, putative
PF3D7_0819900 U6 snRNA-associated Sm-like protein LSm3, putative
PF3D7_1107000 U6 snRNA-associated Sm-like protein LSm4, putative
PF3D7_1443300 U6 snRNA-associated Sm-like protein LSm5, putative
PF3D7_1325000 U6 snRNA-associated Sm-like protein LSm6, putative
PF3D7_1209200 U6 snRNA-associated Sm-like protein LSm7, putative
PF3D7_0829300 U6 snRNA-associated Sm-like protein LSm8, putative
U1 (initial 5′-ss recognition) PF3D7_1367100 U1 small nuclear ribonucleoprotein 70 kda homolog, putative
PF3D7_1306900 U1 small nuclear ribonucleoprotein A, putative
PF3D7_0812700 U1 small nuclear ribonucleoprotein c, putative
U2 (BP detection) PF3D7_1369700 U2 small nuclear ribonucleoprotein A', putative
PF3D7_0935000 U2 small nuclear ribonucleoprotein B'', putative
U2-related (BP and poly-Y recognition) PF3D7_1119300 splicing factor U2AF small subunit, putative
PF3D7_1468800 splicing factor U2AF large subunit, putative
PF3D7_0623600 splicing factor-like protein, putative
SF3a (stability ofU2-BaP interaction) PF3D7_1474500 splicing factor 3A subunit 1, putative
PF3D7_0619900 splicing factor 3A subunit 2, putative
PF3D7_0924700 splicing factor 3A subunit 3, putative
SF3b (stability of U2-BP interaction) PF3D7_0308900 splicing factor 3B subunit 1, putative
PF3D7_1461600 splicing factor 3B subunit 2, putative
PF3D7_1234800 splicing factor 3B subunit 3, putative
PF3D7_1420000 splicing factor 3B subunit 4, putative
PF3D7_1355800 splicing factor 3B subunit 5, putative
PF3D7_1018600 trna wybutosine-synthesizing protein, putative 2.1.1.-
PF3D7_1224900 splicing factor 3B subunit 6, putative
U5 (catalytic activation of spliceosome) PF3D7_0518500
ATP-dependent RNA helicase DDX23, putative 3.6.4.13
PF3D7_1031600
gametocyte exported protein 15 conserved Plasmodium protein, unknown function
PF3D7_1003800 U5 small nuclear ribonucleoprotein component, putative
PF3D7_0422500 pre-mRNA-splicing helicase BRR2, putative 3.6.4.13
PF3D7_1231500 mitosis protein dim1, putative 2.1.1.183
PF3D7_0405400 pre-mRNA-processing-splicing factor 8, putative
PF3D7_1110200 pre-mRNA-processing factor 6, putative
PF3D7_0822800 U5 small nuclear ribonucleoprotein 40 kda protein, putative
U4/U6 (catalytic activation of spliceosome) PF3D7_1309300 U4/U6 small nuclear ribonucleoprotein PRP3, putative
PF3D7_1123900
13 kda ribonucleoprotein-associated protein, putative
PF3D7_1343900 U4/U6 small nuclear ribonucleoprotein PRP4, putative
PF3D7_0409100 U4/U6 small nuclear ribonucleoprotein PRP31, putative
PF3D7_0804800
peptidyl-prolyl cis-trans isomerase 5.2.1.8
tri-snRNP (activation of spliceosome) PF3D7_0323700 U4/U6.U5 tri-snRNP-associated protein 1, putative
PF3D7_1317000 U4/U6.U5 tri-snRNP-associated protein 2, putative
PF3D7_0818000 U4/U6.U5 small nuclear ribonucleoprotein, putative
Prp19/CDC5 (specification of U5 and U6 interactions with RNA) PF3D7_0308600 pre-mRNA-processing factor 19, putative
PF3D7_0403700 pre-mRNA-splicing factor CLF1, putative
PF3D7_1033600 pre-mRNA-splicing factor cef1, putative
PF3D7_1472000 pre-mRNA-splicing factor ISY1, putative
PF3D7_0614400 pre-mRNA-splicing factor CWF7, putative
PF3D7_1235900 pre-mRNA-splicing factor SYF1, putative
PF3D7_0302000 pre-mRNA-splicing factor PRP46, putative
PF3D7_0218700 pre-mRNA-processing protein 45, putative
PF3D7_0522800 pre-mRNA-splicing factor BUD31, putative
PF3D7_1451500 pre-mRNA-splicing factor CWF18, putative
PF3D7_1352700 intron-binding protein aquarius, putative
PF3D7_0722500 pre-mRNA-splicing factor CWC15, putative
PF3D7_1015100 cwc16 domain-containing protein, putative
PF3D7_0528700
peptidyl-prolyl cis-trans isomerase 5.2.1.8
Non-snRNP factors (second step factors) (RNA release) PF3D7_1030100
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22, putative 3.6.4.13
PF3D7_0209800
ATP-dependent RNA helicase UAP56 3.6.4.13
PF3D7_0508700 pre-mRNA-processing ATP-dependent RNA helicase PRP5, putative 3.6.4.13
PF3D7_0610100 pre-mRNA-splicing factor SLU7, putative
PF3D7_1364300
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 3.6.4.13
PF3D7_1220100 pre-mRNA-processing factor 17, putative
PF3D7_0922700 pre-mRNA-splicing factor 18, putative
NMD (detection of nonsense transcripts) PF3D7_1005500
regulator of nonsense transcripts 1, putative
PF3D7_0925800
regulator of nonsense transcripts 2, putative
PF3D7_1327700 regulator of nonsense transcripts 3B, putative
SR and nRNP PF3D7_0517300
serine/arginine-rich splicing factor 1
PF3D7_0503300
serine/arginine-rich splicing factor 12
PF3D7_0606500 polypyrimidine tract binding protein, putative
PF3D7_1022400
serine/arginine-rich splicing factor 4
PF3D7_0614400 pre-mRNA-splicing factor CWF7, putative
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