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Genomic landscape of splicing regulators |
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Fu XD, Ares M Jr. Context-dependent control of alternative splicing by RNA-binding proteins. Nat Rev Genet. 2014 15(10):689-701. PMID: 25112293 |
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H. sapiens gened were BLASTed to the P. falciparum genome |
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H. sapiens ortholog |
PfID |
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Annotation |
Transcript |
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Splicing regulators |
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| 27421 |
CUGBP1 |
PF3D7_1359400 |
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Cugbp Elav-like family member 1 |
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| 27410 |
MBNL1 and ' |
PF3D7_1019300 |
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zinc finger protein, putative |
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| 27417 |
MBNL2 |
PF3D7_1134600 |
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zinc finger protein, putative |
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| 27423 |
NOVA |
PF3D7_1415300 |
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RNA-binding protein Nova-1, putative |
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| 27404 |
PTB and nPTB |
PF3D7_0606500 |
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polypyrimidine tract binding protein, putative |
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| 27413 |
RBFOX1 and RBFOX2 |
PF3D7_1107100 |
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nucleic acid binding protein, putative |
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| 29812 |
TIA‑1 |
PF3D7_1224300 |
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polyadenylate-binding protein 1, putative |
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| 27419 |
TIAL1 |
PF3D7_1321700 |
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splicing factor 1 |
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| 27405 |
QKI |
PF3D7_0623600 |
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splicing factor-like protein, putative |
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| 27412 |
ESRPs ' |
PF3D7_1024200 |
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RNA-binding protein, putative |
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| 29812 |
RBM4 |
PF3D7_1224300 |
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polyadenylate-binding protein 1, putative |
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| 27420 |
RBM5 |
PF3D7_1353400 |
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Ran-binding protein, putative |
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| 27420 |
RBM6 and ' |
PF3D7_1353400 |
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Ran-binding protein, putative |
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| 27420 |
RBM10 |
PF3D7_1353400 |
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Ran-binding protein, putative |
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| 27421 |
ELAV1 |
PF3D7_1359400 |
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Cugbp Elav-like family member 1 |
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| 27425 |
SFA3B |
PF3D7_1461600 |
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splicing factor 3B subunit 2, putative |
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| 27407 |
SF3A |
PF3D7_0924700 |
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splicing factor 3A subunit 3, putative |
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3ʹsplice site factors |
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| 27426 |
U2AF65 |
PF3D7_1468800 |
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splicing factor U2AF large subunit, putative |
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| 27414 |
U2AF35 |
PF3D7_1119300 |
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splicing factor U2AF small subunit, putative |
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| 27405 |
SF1 |
PF3D7_0623600 |
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splicing factor-like protein, putative |
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SR proteins |
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| 27402 |
SRSF1 |
PF3D7_0517300 |
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serine/arginine-rich splicing factor 1 |
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| 27415 |
SRSF2 |
PF3D7_1126800 |
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alternative splicing factor sr-mg, putative |
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| 27402 |
SRSF3 |
PF3D7_0517300 |
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serine/arginine-rich splicing factor 1 |
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| 27411 |
SRSF4 |
PF3D7_1022400 |
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serine/arginine-rich splicing factor 4 |
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| 27401 |
SR |
PF3D7_0503300 |
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serine/arginine-rich splicing factor 12 |
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| 27422 |
SR1 |
PF3D7_1407000 |
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LCCL domain-containing protein |
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| 27424 |
SR2 |
PF3D7_1454300 |
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snf1-related serine/threonine protein kinase kin |
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hnRNPs |
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| 27400 |
hnRNP1 |
PF3D7_0414500 |
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RNA-binding protein, putative |
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| 27400 |
hnRNP A1 |
PF3D7_0414500 |
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RNA-binding protein, putative |
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| 27400 |
hnRNP A2 and hnRNP B1 ' |
PF3D7_0414500 |
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RNA-binding protein, putative |
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| 27408 |
hnRNP C |
PF3D7_1004400 |
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RNA-binding protein, putative |
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| 27416 |
hnRNP F |
PF3D7_1126900 |
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small nuclear ribonucleoprotein F, putative |
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| 27412 |
hnRNP H1 |
PF3D7_1024200 |
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RNA-binding protein, putative |
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| 27404 |
hnRNP L |
PF3D7_0606500 |
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polypyrimidine tract binding protein, putative |
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| 27409 |
hnRNP M |
PF3D7_1006800 |
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G-strand-binding protein 2 |
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| 27403 |
hnRNP U |
PF3D7_0521700 |
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ATP-dependent RNA helicase ddx1, putative |
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| 27404 |
hnRNP L |
PF3D7_0606500 |
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polypyrimidine tract binding protein, putative |
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hnRNP M |
NONE |
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hnRNP U |
NONE |
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| 27406 |
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PF3D7_0822300 |
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small nuclear ribonucleoprotein G, putative |
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| 27399 |
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PF3D7_0218500 |
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small nuclear ribonucleoprotein Sm D2, putative |
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